Infinity Wiki - User contributions [en]

https://infinity.ncbr.muni.cz/wiki94/api.php?action=feedcontributions&feedformat=atom&user=Kulhanek Infinity Wiki - User contributions [en] 2026-10-03T23:18:00Z User contributions MediaWiki 1.44.2 https://infinity.ncbr.muni.cz/wiki94/index.php?title=Infinity_Personal&diff=255 Infinity Personal 2024-02-06T14:13:42Z

<p>Kulhanek: </p> <hr /> <div>[[Documentation]] / [[Activation, Deactivation, and Installation]] / [[Infinity Personal]] __NOEDITSECTION__<br /> ----<br /> <div style="float: right; margin: 5px 0px 5px 5px;">__TOC__</div><br /> Infinity Personal is a set of tools allowing you to install the Infinity system on your computer, either PC or laptop. The software modules are downloaded on your computer and can be used offline. In addition, you can monitor and submit computational jobs to supported clusters if you are online. Note: your local account should have the same name as in e-Infra space for reasonable work.<br /> <br /> The currently supported operating systems are:<br /> * Ubuntu 22.04 LTS <br /> <br /> =Register=<br /> <br /> First, you must join the Infinity Personal group. Once the application is approved by the administrator, you can continue. <br /> <br /> <span class="plainlinks">[https://perun.cesnet.cz/allfed/registrar/?vo=VO_muni_ncbr&group=srv:lcc-infinity-personal&locale=en <span class="mw-ui-button mw-ui-constructive mw-ui-small">Register into Infinity Personal group</span>]</span><br /> <br /> =Install Infinity Personal=<br /> <br /> The core of Infinity Personal is installed by using system packages. You have to activate the NCBR package repository for a given version of OS and then install the package.<br /> <br /> 1) Activate the NCBR public package repository:<br /> <br /> https://einfra.ncbr.muni.cz/ > User support > Ubuntu Packages > NCBR PUBLIC (LCC and WOLF mirrors available)<br /> <br /> <span class="plainlinks">[https://wolf.ncbr.muni.cz/whitezone/packages/public/22.04/ <span class="mw-ui-button mw-ui-constructive mw-ui-small">NCBR PUBLIC Repository (WOLF mirror)</span>]</span><br /> <br /> Follow '''Instructions''' in the section '''How to activate access to the package repository'''.<br /> <br /> 2) Install the core package with AMS:<br /> <br /> $ sudo apt-get install ncbr-ams-core-9.0-personal<br /> <br /> =Configure Infinity Personal=<br /> <br /> At this stage, you will configure Infinity Personal using the ams-personal command, which can be used only by a user in the sudo group. You will generate SSH keys to access the Infinity Personal repository, update the shell environment, and set up your user account to grant access to the local Infinity Personal repository. Each step requires you to re-login your computer. <br /> <br /> ==Basic Setup==<br /> <br /> $ ams-personal envinit<br /> -> logout/login<br /> $ ams-personal useradd<br /> -> logout/login <br /> $ ams-personal gensshkeys<br /> <br /> Confirm that you want to create the new key. The key is composed of the type, key, and user ID. <br /> <br /> ==Register SSH Key==<br /> <br /> Put all the ssh key content into your e-Infra identity in the Perun system. <br /> <br /> https://perun.cesnet.cz/fed/gui<br /> <br /> a) Left tab "User" -> Select identity -> Top tab "Authentication" -> Kerberos & SSH keys<br /> b) Create a new key in the section "Public ssh Key:" (a green button with a plus sign)<br /> c) Insert the key<br /> d) Press the "Save" button.<br /> <br /> You need to wait up to 1 hour to complete the propagation.<br /> <br /> ==Install Core Software Modules==<br /> <br /> $ ams-personal coremods<br /> -> logout/login<br /> <br /> =Install Software Modules=<br /> <br /> The list of all software modules is provided online at iSoftRepo service:<br /> <br /> <span class="plainlinks">[https://infinity.ncbr.muni.cz/isoftrepo/fcgi-bin/isoftrepo.fcgi <span class="mw-ui-button mw-ui-constructive mw-ui-small">iSoftRepo</span>]</span><br /> <br /> The modules can be installed by the ams-personal command. For example, you can install the VMD module by:<br /> <br /> $ ams-personal install vmd<br /> <br /> See ams-personal -h for other options.<br /> <br /> =Additional Computer Tweaks=<br /> The packages described below are authoritative. Once the setup is changed, it is difficult to undo it! <br /> <br /> ==Kerberos==<br /> Install the '''ncbr-krb5-einfra''' package for general Kerberos support in the META and EINFRA realms. This provides the '''kinit''' and '''klist''' commands. To employ the ssh command Kerberos tickets, install the '''ncbr-ssh-client-config''' package. If you have a local account with the same '''*name*''' and '''*password*''' as in e-Infra space, you can benefit from the '''ncbr-personal-authc-einfra''' package. You will get a Kerberos ticket if online during the local authentication. In offline mode, your identity will be validated locally. <br /> <br /> {| class="wikitable"<br /> ! Package<br /> ! Purpose<br /> |-<br /> | ncbr-krb5-einfra<br /> | general support for Kerberos (META realm)<br /> |-<br /> | ncbr-ssh-client-config<br /> | configure ssh client to employ Kerberos<br /> |-<br /> | ncbr-personal-authc-einfra<br /> | install and configure pam_krb5 <br /> |}<br /> <br /> $ sudo apt-get install ncbr-krb5-einfra<br /> $ sudo apt-get install ncbr-ssh-client-config<br /> $ sudo apt-get install ncbr-personal-authc-einfra<br /> <br /> ==MetaCentrum Storages==<br /> <br /> {| class="wikitable"<br /> ! Package<br /> ! Purpose<br /> |-<br /> | ncbr-metanfs4-krb5i-metastorage<br /> | MetaCentrum storages<br /> |-<br /> | ncbr-metanfs4-keytab<br /> | generate nfs keytab<br /> |}<br /> <br /> ===Install Packages===<br /> <br /> $ sudo apt-get install ncbr-metanfs4-krb5i-metastorage<br /> $ sudo apt-get install ncbr-metanfs4-keytab<br /> <br /> ===Generate NFS Keytab===<br /> You must be in the sudo group to generate the NFS keytab. First, get the valid Kerberos tickets and then generate the keytab.<br /> <br /> $ kinit<br /> $ gen-metanfs4-keytab<br /> <br /> ===Reboot===<br /> You must reboot the computer to start using the storages.<br /> <br /> ==Remote Desktop==<br /> <br /> {| class="wikitable"<br /> ! Package<br /> ! Purpose<br /> |-<br /> | ncbr-tigervnc<br /> | native tigervnc server and client<br /> |}</div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=Infinity_Personal&diff=254 Infinity Personal 2024-02-06T14:05:23Z

<p>Kulhanek: </p> <hr /> <div>[[Documentation]] / [[Activation, Deactivation, and Installation]] / [[Infinity Personal]] __NOEDITSECTION__<br /> ----<br /> <div style="float: right; margin: 5px 0px 5px 5px;">__TOC__</div><br /> Infinity Personal is a set of tools allowing you to install the Infinity system on your computer, either PC or laptop. The software modules are downloaded on your computer and can be used offline. In addition, you can monitor and submit computational jobs to supported clusters if you are online. Note: your local account should have the same name as in e-Infra space for reasonable work.<br /> <br /> The currently supported operating systems are:<br /> * Ubuntu 22.04 LTS <br /> <br /> =Register=<br /> <br /> First, you must join the Infinity Personal group. Once the application is approved by the administrator, you can continue. <br /> <br /> <span class="plainlinks">[https://perun.cesnet.cz/allfed/registrar/?vo=VO_muni_ncbr&group=srv:lcc-infinity-personal&locale=en <span class="mw-ui-button mw-ui-constructive mw-ui-small">Register into Infinity Personal group</span>]</span><br /> <br /> =Install Infinity Personal=<br /> <br /> The core of Infinity Personal is installed by using system packages. You have to activate the NCBR package repository for a given version of OS and then install the package.<br /> <br /> 1) Activate the NCBR public package repository:<br /> <br /> https://einfra.ncbr.muni.cz/ > User support > Ubuntu Packages > NCBR PUBLIC (LCC and WOLF mirrors available)<br /> <br /> <span class="plainlinks">[https://wolf.ncbr.muni.cz/whitezone/packages/public/22.04/ <span class="mw-ui-button mw-ui-constructive mw-ui-small">NCBR PUBLIC Repository (WOLF mirror)</span>]</span><br /> <br /> Follow '''Instructions''' in the section '''How to activate access to the package repository'''.<br /> <br /> 2) Install the core package with AMS:<br /> <br /> $ sudo apt-get install ncbr-ams-core-9.0-personal<br /> <br /> =Configure Infinity Personal=<br /> <br /> At this stage, you will configure Infinity Personal using the ams-personal command, which can be used only by a user in the sudo group. You will generate SSH keys to access the Infinity Personal repository, update the shell environment, and set up your user account to grant access to the local Infinity Personal repository. Each step requires you to re-login your computer. <br /> <br /> ==Basic Setup==<br /> <br /> $ ams-personal envinit<br /> -> logout/login<br /> $ ams-personal useradd<br /> -> logout/login <br /> $ ams-personal gensshkeys<br /> <br /> Confirm that you want to create the new key. The key is composed of the type, key, and user ID. <br /> <br /> ==Register SSH Key==<br /> <br /> Put all the ssh key content into your e-Infra identity in the Perun system. <br /> <br /> https://perun.cesnet.cz/fed/gui<br /> <br /> a) Left tab "User" -> Select identity -> Top tab "Authentication" -> Kerberos & SSH keys<br /> b) Create a new key in the section "Public ssh Key:" (a green button with a plus sign)<br /> c) Insert the key<br /> d) Press the "Save" button.<br /> <br /> You need to wait up to 1 hour to complete the propagation.<br /> <br /> ==Install Core Software Modules==<br /> <br /> $ ams-personal coremods<br /> -> logout/login<br /> <br /> =Install Software Modules=<br /> <br /> The list of all software modules is provided online at iSoftRepo service:<br /> <br /> <span class="plainlinks">[https://infinity.ncbr.muni.cz/isoftrepo/fcgi-bin/isoftrepo.fcgi <span class="mw-ui-button mw-ui-constructive mw-ui-small">iSoftRepo</span>]</span><br /> <br /> The modules can be installed by the ams-personal command. For example, you can install the VMD module by:<br /> <br /> $ ams-personal install vmd<br /> <br /> See ams-personal -h for other options.<br /> <br /> =Additional Computer Tweaks=<br /> The packages described below are authoritative. Once the setup is changed, it is difficult to undo it! <br /> <br /> ==Kerberos==<br /> Install the '''ncbr-krb5-einfra''' package for general Kerberos support in the META and EINFRA realms. This provides the '''kinit''' and '''klist''' commands. To employ the ssh command Kerberos tickets, install the '''ncbr-ssh-client-config''' package. If you have a local account with the same '''*name*''' and '''*password*''' as in e-Infra space, you can benefit from the '''ncbr-personal-authc-einfra''' package. You will get a Kerberos ticket if online during the local authentication. In offline mode, your identity will be validated locally. <br /> <br /> {| class="wikitable"<br /> ! Package<br /> ! Purpose<br /> |-<br /> | ncbr-krb5-einfra<br /> | general support for Kerberos (META realm)<br /> |-<br /> | ncbr-ssh-client-config<br /> | configure ssh client to employ Kerberos<br /> |-<br /> | ncbr-personal-authc-einfra<br /> | install and configure pam_krb5 <br /> |}<br /> <br /> $ sudo apt-get install ncbr-krb5-einfra<br /> $ sudo apt-get install ncbr-ssh-client-config<br /> $ sudo apt-get install ncbr-personal-authc-einfra<br /> <br /> ==MetaCentrum Storages==<br /> <br /> {| class="wikitable"<br /> ! Package<br /> ! Purpose<br /> |-<br /> | ncbr-metanfs4-krb5i-metastorage<br /> | MetaCentrum storages<br /> |-<br /> | ncbr-metanfs4-keytab<br /> | generate nfs keytab<br /> |}<br /> <br /> ===Install Packages===<br /> <br /> $ sudo apt-get install ncbr-metanfs4-krb5i-metastorage<br /> $ sudo apt-get install ncbr-metanfs4-keytab<br /> <br /> ===Generate NFS Keytab===<br /> You must be in the sudo group to generate the NFS keytab. First, get the valid Kerberos tickets and then generate the keytab.<br /> <br /> $ kinit<br /> $ gen-metanfs4-keytab<br /> <br /> ===Reboot===<br /> You must reboot the computer to start using the storages.</div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=Infinity_Personal&diff=253 Infinity Personal 2024-02-06T13:56:30Z

<p>Kulhanek: </p> <hr /> <div>[[Documentation]] / [[Activation, Deactivation, and Installation]] / [[Infinity Personal]] __NOEDITSECTION__<br /> ----<br /> <div style="float: right; margin: 5px 0px 5px 5px;">__TOC__</div><br /> Infinity Personal is a set of tools allowing you to install the Infinity system on your computer, either PC or laptop. The software modules are downloaded on your computer and can be used offline. In addition, you can monitor and submit computational jobs to supported clusters if you are online. Note: your local account should have the same name as in e-Infra space for reasonable work.<br /> <br /> The currently supported operating systems are:<br /> * Ubuntu 22.04 LTS <br /> <br /> =Register=<br /> <br /> First, you must join the Infinity Personal group. Once the application is approved by the administrator, you can continue. <br /> <br /> <span class="plainlinks">[https://perun.cesnet.cz/allfed/registrar/?vo=VO_muni_ncbr&group=srv:lcc-infinity-personal&locale=en <span class="mw-ui-button mw-ui-constructive mw-ui-small">Register into Infinity Personal group</span>]</span><br /> <br /> =Install Infinity Personal=<br /> <br /> The core of Infinity Personal is installed by using system packages. You have to activate the NCBR package repository for a given version of OS and then install the package.<br /> <br /> 1) Activate the NCBR public package repository:<br /> <br /> https://einfra.ncbr.muni.cz/ > User support > Ubuntu Packages > NCBR PUBLIC (LCC and WOLF mirrors available)<br /> <br /> <span class="plainlinks">[https://wolf.ncbr.muni.cz/whitezone/packages/public/22.04/ <span class="mw-ui-button mw-ui-constructive mw-ui-small">NCBR PUBLIC Repository (WOLF mirror)</span>]</span><br /> <br /> Follow '''Instructions''' in the section '''How to activate access to the package repository'''.<br /> <br /> 2) Install the core package with AMS:<br /> <br /> $ sudo apt-get install ncbr-ams-core-9.0-personal<br /> <br /> =Configure Infinity Personal=<br /> <br /> At this stage, you will configure Infinity Personal using the ams-personal command, which can be used only by a user in the sudo group. You will generate SSH keys to access the Infinity Personal repository, update the shell environment, and set up your user account to grant access to the local Infinity Personal repository. Each step requires you to re-login your computer. <br /> <br /> ==Basic Setup==<br /> <br /> $ ams-personal envinit<br /> -> logout/login<br /> $ ams-personal useradd<br /> -> logout/login <br /> $ ams-personal gensshkeys<br /> <br /> Confirm that you want to create the new key. The key is composed of the type, key, and user ID. <br /> <br /> ==Register SSH Key==<br /> <br /> Put all the ssh key content into your e-Infra identity in the Perun system. <br /> <br /> https://perun.cesnet.cz/fed/gui<br /> <br /> a) Left tab "User" -> Select identity -> Top tab "Authentication" -> Kerberos & SSH keys<br /> b) Create a new key in the section "Public ssh Key:" (a green button with a plus sign)<br /> c) Insert the key<br /> d) Press the "Save" button.<br /> <br /> You need to wait up to 1 hour to complete the propagation.<br /> <br /> ==Install Core Software Modules==<br /> <br /> $ ams-personal coremods<br /> -> logout/login<br /> <br /> =Install Software Modules=<br /> <br /> The list of all software modules is provided online at iSoftRepo service:<br /> <br /> <span class="plainlinks">[https://infinity.ncbr.muni.cz/isoftrepo/fcgi-bin/isoftrepo.fcgi <span class="mw-ui-button mw-ui-constructive mw-ui-small">iSoftRepo</span>]</span><br /> <br /> The modules can be installed by the ams-personal command. For example, you can install the VMD module by:<br /> <br /> $ ams-personal install vmd<br /> <br /> See ams-personal -h for other options.<br /> <br /> =Additional Computer Tweaks=<br /> All these packages are authoritative. Once the setup is changed, it is difficult to undo it! <br /> <br /> ==Kerberos==<br /> Install the '''ncbr-krb5-einfra''' package for general Kerberos support in the META and EINFRA realms. This provides the '''kinit''' and '''klist''' commands. To employ the ssh command Kerberos tickets, install the '''ncbr-ssh-client-config''' package. If you have a local account with the same '''*name*''' and '''*password*''' as in e-Infra space, you can benefit from the '''ncbr-personal-authc-einfra''' package. During the local authentication, you will get a Kerberos ticket if you are online. In offline mode, the identity will be validated locally. <br /> <br /> {| class="wikitable"<br /> ! Package<br /> ! Purpose<br /> |-<br /> | ncbr-krb5-einfra<br /> | general support for Kerberos (META realm)<br /> |-<br /> | ncbr-ssh-client-config<br /> | configure ssh client to employ Kerberos<br /> |-<br /> | ncbr-personal-authc-einfra<br /> | install and configure pam_krb5 <br /> |}</div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=Infinity_Personal&diff=252 Infinity Personal 2024-02-06T13:43:28Z

<p>Kulhanek: </p> <hr /> <div>[[Documentation]] / [[Activation, Deactivation, and Installation]] / [[Infinity Personal]] __NOEDITSECTION__<br /> ----<br /> <div style="float: right; margin: 5px 0px 5px 5px;">__TOC__</div><br /> Infinity Personal is a set of tools allowing you to install the Infinity system on your computer, either PC or laptop. The software modules are downloaded on your computer and can be used offline. In addition, you can monitor and submit computational jobs to supported clusters if you are online. Note: your local account should have the same name as in e-Infra space for reasonable work.<br /> <br /> The currently supported operating systems are:<br /> * Ubuntu 22.04 LTS <br /> <br /> =Register=<br /> <br /> First, you must join the Infinity Personal group. Once the application is approved by the administrator, you can continue. <br /> <br /> <span class="plainlinks">[https://perun.cesnet.cz/allfed/registrar/?vo=VO_muni_ncbr&group=srv:lcc-infinity-personal&locale=en <span class="mw-ui-button mw-ui-constructive mw-ui-small">Register into Infinity Personal group</span>]</span><br /> <br /> =Install Infinity Personal=<br /> <br /> The core of Infinity Personal is installed by using system packages. You have to activate the NCBR package repository for a given version of OS and then install the package.<br /> <br /> 1) Activate the NCBR public package repository:<br /> <br /> https://einfra.ncbr.muni.cz/ > User support > Ubuntu Packages > NCBR PUBLIC (LCC and WOLF mirrors available)<br /> <br /> <span class="plainlinks">[https://wolf.ncbr.muni.cz/whitezone/packages/public/22.04/ <span class="mw-ui-button mw-ui-constructive mw-ui-small">NCBR PUBLIC Repository (WOLF mirror)</span>]</span><br /> <br /> Follow '''Instructions''' in the section '''How to activate access to the package repository'''.<br /> <br /> 2) Install the core package with AMS:<br /> <br /> $ sudo apt-get install ncbr-ams-core-9.0-personal<br /> <br /> =Configure Infinity Personal=<br /> <br /> At this stage, you will configure Infinity Personal using the ams-personal command, which can be used only by a user in the sudo group. You will generate SSH keys to access the Infinity Personal repository, update the shell environment, and set up your user account to grant access to the local Infinity Personal repository. Each step requires you to re-login your computer. <br /> <br /> ==Basic Setup==<br /> <br /> $ ams-personal envinit<br /> -> logout/login<br /> $ ams-personal useradd<br /> -> logout/login <br /> $ ams-personal gensshkeys<br /> <br /> Confirm that you want to create the new key. The key is composed of the type, key, and user ID. <br /> <br /> ==Register SSH Key==<br /> <br /> Put all the ssh key content into your e-Infra identity in the Perun system. <br /> <br /> https://perun.cesnet.cz/fed/gui<br /> <br /> a) Left tab "User" -> Select identity -> Top tab "Authentication" -> Kerberos & SSH keys<br /> b) Create a new key in the section "Public ssh Key:" (a green button with a plus sign)<br /> c) Insert the key<br /> d) Press the "Save" button.<br /> <br /> You need to wait up to 1 hour to complete the propagation.<br /> <br /> ==Install Core Software Modules==<br /> <br /> $ ams-personal coremods<br /> -> logout/login<br /> <br /> =Install Software Modules=<br /> <br /> The list of all software modules is provided online at iSoftRepo service:<br /> <br /> <span class="plainlinks">[https://infinity.ncbr.muni.cz/isoftrepo/fcgi-bin/isoftrepo.fcgi <span class="mw-ui-button mw-ui-constructive mw-ui-small">iSoftRepo</span>]</span><br /> <br /> The modules can be installed by the ams-personal command. For example, you can install the VMD module by:<br /> <br /> $ ams-personal install vmd<br /> <br /> See ams-personal -h for other options.</div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=Documentation&diff=251 Documentation 2024-02-06T13:34:18Z

<p>Kulhanek: </p> <hr /> <div><templatestyles src="Template:Main_page/styles.css" /> __NOTOC__ __NOEDITSECTION__<br /> <div id="audiences" class="mainpage_row"><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Book-learn-volume-manual-svgrepo-com1.svg|20px|middle|link=]]</span><span>User Manual</span></h3><br /> <div id="mainpage-admins" title="system administrators" class="items"><br /> {{UserMan}}<br /> </div><br /> </div><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Newspaper-6-svgrepo-com.svg|20px|middle|link=]]</span><span>News</span></h3><br /> <div id="mainpage-admins" title="system administrators" class="items"><br /> * 2024-02-06 [[Infinity Personal|Infinity Personal (beta testing)]]<br /> * [[2024-01 New major version AMS(9.x)/ABS(4.x)|2024-02-05 Removal of the old Infinity AMS(8.x)/ABS(3.x)]]<br /> * 2024-01-24 AMS(9.x)/ABS(4.x) deployed on the SOKAR cluster<br /> * 2024-01-22 AMS(9.x)/ABS(4.x) deployed on the IVAVIK cluster<br /> * 2024-01-21 [https://infinity.ncbr.muni.cz/isoftrepo/fcgi-bin/isoftrepo.fcgi iSoftRepo] web service installed<br /> <span class="plainlinks">[[News | <span class="mw-ui-button mw-ui-constructive mw-ui-small">More news</span>]]</span><br /> </div><br /> </div><br /> </div><br /> <br /> <div style="clear: both;"></div><br /> <br /> <div id="audiences" class="mainpage_row"><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Screen-computer-config-configuration-svgrepo-com.svg|20px|middle|link=]]</span><span>Activation, Deactivation, and Installation</span></h3><br /> <div id="mainpage-admins" title="system administrators" class="items"><br /> {{Activation, Deactivation, and Installation}}<br /> </div><br /> </div><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Reference-svgrepo-com.svg|20px|middle|link=]]</span><span>Reference Manual</span></h3><br /> <div id="mainpage-admins" title="system administrators" class="items"><br /> {{RefMan}}<br /> </div><br /> </div><br /> </div></div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=Infinity_Personal&diff=250 Infinity Personal 2024-02-06T13:29:13Z

<p>Kulhanek: </p> <hr /> <div>[[Documentation]] / [[Activation, Deactivation, and Installation]] / [[Infinity Personal]] __NOEDITSECTION__<br /> ----<br /> <div style="float: right; margin: 5px 0px 5px 5px;">__TOC__</div><br /> Infinity Personal is a set of tools allowing you to install the Infinity system on your computer, either PC or laptop. The software modules are downloaded on your computer and can be used offline. In addition, you can monitor and submit computational jobs to supported clusters if you are online. Note: your local account should have the same name as in e-Infra space for reasonable work.<br /> <br /> The currently supported operating systems are:<br /> * Ubuntu 22.04 LTS <br /> <br /> =1. Register=<br /> <br /> First, you must join the Infinity Personal group. Once the application is approved by the administrator, you can continue. <br /> <br /> <span class="plainlinks">[https://perun.cesnet.cz/allfed/registrar/?vo=VO_muni_ncbr&group=srv:lcc-infinity-personal&locale=en <span class="mw-ui-button mw-ui-constructive mw-ui-small">Register into Infinity Personal group</span>]</span><br /> <br /> =2. Install Infinity Personal=<br /> <br /> The core of Infinity Personal is installed by using system packages. You have to activate the NCBR package repository for a given version of OS and then install the package.<br /> <br /> 1) Activate the NCBR public package repository:<br /> <br /> https://einfra.ncbr.muni.cz/ > User support > Ubuntu Packages > NCBR PUBLIC (LCC and WOLF mirrors available)<br /> <br /> <span class="plainlinks">[https://wolf.ncbr.muni.cz/whitezone/packages/public/22.04/ <span class="mw-ui-button mw-ui-constructive mw-ui-small">NCBR PUBLIC Repository (WOLF mirror)</span>]</span><br /> <br /> Follow '''Instructions''' in the section '''How to activate access to the package repository'''.<br /> <br /> 2) Install the core package with AMS:<br /> <br /> $ sudo apt-get install ncbr-ams-core-9.0-personal<br /> <br /> =3. Configure Infinity Personal=<br /> <br /> At this stage, you will configure Infinity Personal using the ams-personal command, which can be used only by a user in the sudo group. You will generate SSH keys to access the Infinity Personal repository, update the shell environment, and set up your user account to grant access to the local Infinity Personal repository. Each step requires you to re-login your computer. <br /> <br /> ==Basic Setup==<br /> <br /> $ ams-personal envinit<br /> -> logout/login<br /> $ ams-personal useradd<br /> -> logout/login <br /> $ ams-personal gensshkeys<br /> <br /> Confirm that you want to create the new key. The key is composed of the type, key, and user ID. <br /> <br /> ==Register SSH Key==<br /> <br /> Put all the ssh key content into your e-Infra identity in the Perun system. <br /> <br /> https://perun.cesnet.cz/fed/gui<br /> <br /> a) Left tab "User" -> Select identity -> Top tab "Authentication" -> Kerberos & SSH keys<br /> b) Create a new key in the section "Public ssh Key:" (a green button with a plus sign)<br /> c) Insert the key<br /> d) Press the "Save" button.<br /> <br /> You need to wait up to 1 hour to complete the propagation.<br /> <br /> ==Install Core Software Modules==<br /> <br /> $ ams-personal coremods<br /> -> logout/login<br /> <br /> =4. Install Software Modules=<br /> <br /> The list of all software modules is provided online at iSoftRepo service:<br /> <br /> <span class="plainlinks">[https://infinity.ncbr.muni.cz/isoftrepo/fcgi-bin/isoftrepo.fcgi <span class="mw-ui-button mw-ui-constructive mw-ui-small">iSoftRepo</span>]</span><br /> <br /> The modules can be installed by the ams-personal command. For example, you can install the VMD module by:<br /> <br /> $ ams-personal install vmd<br /> <br /> See ams-personal -h for other options.</div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=Infinity_Personal&diff=249 Infinity Personal 2024-02-06T13:21:20Z

<p>Kulhanek: </p> <hr /> <div>[[Documentation]] / [[Activation, Deactivation, and Installation]] / [[Infinity Personal]] __NOEDITSECTION__<br /> ----<br /> <div style="float: right; margin: 5px 0px 5px 5px;">__TOC__</div><br /> Infinity Personal is a set of tools allowing you to install the Infinity system on your computer, either PC or laptop. The software modules are downloaded on your computer and can be used offline. In addition, you can monitor and submit computational jobs to supported clusters if you are online. Note: your local account should have the same name as in e-Infra space for reasonable work.<br /> <br /> The currently supported operating systems are:<br /> * Ubuntu 22.04 LTS <br /> <br /> =1. Register=<br /> <br /> First, you must join the Infinity Personal group. Once the application is approved by the administrator, you can continue. <br /> <br /> <span class="plainlinks">[https://perun.cesnet.cz/allfed/registrar/?vo=VO_muni_ncbr&group=srv:lcc-infinity-personal&locale=en <span class="mw-ui-button mw-ui-constructive mw-ui-small">Register into Infinity Personal group</span>]</span><br /> <br /> =2. Install Infinity Personal=<br /> <br /> The core of Infinity Personal is installed using system packages. You have to activate the NCBR package repository for a given version of OS and then install the specified package.<br /> <br /> 1) Activate the NCBR public package repository:<br /> <br /> https://einfra.ncbr.muni.cz/ > User support > Ubuntu Packages > NCBR PUBLIC (LCC and WOLF mirrors available)<br /> <br /> <span class="plainlinks">[https://wolf.ncbr.muni.cz/whitezone/packages/public/22.04/ <span class="mw-ui-button mw-ui-constructive mw-ui-small">NCBR PUBLIC Repository (WOLF mirror)</span>]</span><br /> <br /> Follow '''Instructions''' in the section '''How to activate access to the package repository'''.<br /> <br /> 2) Install the core package with AMS:<br /> <br /> $ sudo apt-get install ncbr-ams-core-9.0-personal<br /> <br /> =3. Configure Infinity Personal=<br /> <br /> At this stage, you can configure Infinity Personal using the ams-personal command. You must generate SSH keys to access the Infinity Personal repository, update the shell environment, and set up your user account to grant access to the local Infinity Personal repository. Each step require to re-login the session: <br /> <br /> ==Basic Setup==<br /> <br /> $ ams-personal envinit<br /> -> logout/login<br /> $ ams-personal useradd<br /> -> logout/login <br /> $ ams-personal gensshkeys<br /> <br /> Confirm that you want to create the new key. The key is composed of the type, key, and user ID. <br /> <br /> ==Register SSH Key==<br /> <br /> Put all the ssh key content into your e-Infra identity in the Perun system. <br /> <br /> https://perun.cesnet.cz/fed/gui<br /> <br /> a) Left tab "User" -> Select identity -> Top tab "Authentication" -> Kerberos & SSH keys<br /> b) Create a new key in the section "Public ssh Key:"<br /> c) Insert the key<br /> d) Press the "Save" button.<br /> <br /> You need to wait up to 1 hour to finish the propagation.<br /> <br /> ==Install Core Modules==<br /> <br /> $ ams-personal coremods<br /> -> logout/login<br /> <br /> =2. Install Software Modules=<br /> <br /> <span class="plainlinks">[https://infinity.ncbr.muni.cz/isoftrepo/fcgi-bin/isoftrepo.fcgi <span class="mw-ui-button mw-ui-constructive mw-ui-small">iSoftRepo</span>]</span></div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=Infinity_Personal&diff=248 Infinity Personal 2024-02-06T13:17:26Z

<p>Kulhanek: </p> <hr /> <div>[[Documentation]] / [[Activation, Deactivation, and Installation]] / [[Infinity Personal]] __NOEDITSECTION__<br /> ----<br /> Infinity Personal is a set of tools allowing you to install the Infinity system on your computer, either PC or laptop. The software modules are downloaded on your computer and can be used offline. In addition, you can monitor and submit computational jobs to supported clusters if you are online. Note: your local account should have the same name as in e-Infra space for reasonable work.<br /> <br /> The currently supported operating systems are:<br /> * Ubuntu 22.04 LTS <br /> <br /> =1. Register=<br /> <br /> First, you must join the Infinity Personal group. Once the application is approved by the administrator, you can continue. <br /> <br /> <span class="plainlinks">[https://perun.cesnet.cz/allfed/registrar/?vo=VO_muni_ncbr&group=srv:lcc-infinity-personal&locale=en <span class="mw-ui-button mw-ui-constructive mw-ui-small">Register into Infinity Personal group</span>]</span><br /> <br /> =2. Install Infinity Personal=<br /> <br /> The core of Infinity Personal is installed using system packages. You have to activate the NCBR package repository for a given version of OS and then install the specified package.<br /> <br /> 1) Activate the NCBR public package repository:<br /> <br /> https://einfra.ncbr.muni.cz/ > User support > Ubuntu Packages > NCBR PUBLIC (LCC and WOLF mirrors available)<br /> <br /> <span class="plainlinks">[https://wolf.ncbr.muni.cz/whitezone/packages/public/22.04/ <span class="mw-ui-button mw-ui-constructive mw-ui-small">NCBR PUBLIC Repository (WOLF mirror)</span>]</span><br /> <br /> Follow '''Instructions''' in the section '''How to activate access to the package repository'''.<br /> <br /> 2) Install the core package with AMS:<br /> <br /> $ sudo apt-get install ncbr-ams-core-9.0-personal<br /> <br /> =3. Configure Infinity Personal=<br /> <br /> At this stage, you can configure Infinity Personal using the ams-personal command. You must generate SSH keys to access the Infinity Personal repository, update the shell environment, and set up your user account to grant access to the local Infinity Personal repository. Each step require to re-login the session: <br /> <br /> ==Basic Setup==<br /> <br /> $ ams-personal envinit<br /> -> logout/login<br /> $ ams-personal useradd<br /> -> logout/login <br /> $ ams-personal gensshkeys<br /> <br /> Confirm that you want to create the new key. The key is composed of the type, key, and user ID. <br /> <br /> ==Register SSH Key==<br /> <br /> Put all the ssh key content into your e-Infra identity in the Perun system. <br /> <br /> https://perun.cesnet.cz/fed/gui<br /> <br /> a) Left tab "User" -> Select identity -> Top tab "Authentication" -> Kerberos & SSH keys<br /> b) Create a new key in the section "Public ssh Key:"<br /> c) Insert the key<br /> d) Press the "Save" button.<br /> <br /> You need to wait up to 1 hour to finish the propagation.<br /> <br /> ==Install Core Modules==<br /> <br /> $ ams-personal coremods<br /> -> logout/login<br /> <br /> =2. Install Software Modules=<br /> <br /> <span class="plainlinks">[https://infinity.ncbr.muni.cz/isoftrepo/fcgi-bin/isoftrepo.fcgi <span class="mw-ui-button mw-ui-constructive mw-ui-small">iSoftRepo</span>]</span></div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=Infinity_Personal&diff=247 Infinity Personal 2024-02-06T12:58:16Z

<p>Kulhanek: </p> <hr /> <div>[[Documentation]] / [[Activation, Deactivation, and Installation]] / [[Infinity Personal]] __NOEDITSECTION__<br /> ----<br /> Infinity Personal is a set of tools allowing you to install the Infinity system on your computer, either PC or laptop. The currently supported operating systems are:<br /> * Ubuntu 22.04 LTS<br /> The software modules are downloaded on your computer and can be used offline. In addition, you can monitor and submit computational jobs to supported clusters if you are online. Your local account must have the same name as in e-Infra space for reasonable operation. <br /> <br /> =1. Register=<br /> <br /> First, you must join the Infinity Personal group. Once the application is approved by the administrator, you can continue. <br /> <br /> <span class="plainlinks">[https://perun.cesnet.cz/allfed/registrar/?vo=VO_muni_ncbr&group=srv:lcc-infinity-personal&locale=en <span class="mw-ui-button mw-ui-constructive mw-ui-small">Register into Infinity Personal group</span>]</span><br /> <br /> =2. Install Infinity Personal=<br /> <br /> The core of Infinity Personal is installed using system packages. You have to activate the NCBR package repository for a given version of OS and then install the specified package.<br /> <br /> 1) Activate the NCBR public package repository:<br /> <br /> https://einfra.ncbr.muni.cz/ > User support > Ubuntu Packages > NCBR PUBLIC (LCC and WOLF mirrors available)<br /> <br /> <span class="plainlinks">[https://wolf.ncbr.muni.cz/whitezone/packages/public/22.04/ <span class="mw-ui-button mw-ui-constructive mw-ui-small">NCBR PUBLIC Repository (WOLF mirror)</span>]</span><br /> <br /> Follow '''Instructions''' in the section '''How to activate access to the package repository'''.<br /> <br /> 2) Install the core package with AMS:<br /> <br /> $ sudo apt-get install ncbr-ams-core-9.0-personal<br /> <br /> =3. Configure Infinity Personal=<br /> <br /> 2) Instalace balicku ncbr-ams-core-8.0-personal<br /> <br /> $ sudo apt-get update<br /> $ sudo apt-get install ncbr-ams-core-8.0-personal ncbr-env-infinity-8.0-personal<br /> <br /> Odhlaseni + nove prihlaseni<br /> <br /> 3) vytvoreni ssh klicu pro Infinity ucet<br /> <br /> $ ams-personal gensshkeys<br /> <br /> 4) registrace ssh klice do vaseho e-infra uctu v perunu<br /> <br /> https://perun.cesnet.cz/fed/gui<br /> <br /> Leva zalozka "User" -> Zvolit uzivatele -> Horni zalozka<br /> "Authentication" -> Kerberos & SSH keys, vytvorit novy (plusko) v<br /> casti "Public ssh Key:", a vlozit ssh klic z bodu 3<br /> Nezapomenout ulozit! Tlacitko "Save" pod "Kerberos & SSH keys"<br /> <br /> 5) podani prihlasky k pristupu k Infinity repozitari<br /> <br /> https://perun.cesnet.cz/allfed/registrar/?vo=VO_muni_ceitec&group=Services:Infinity+Personal+Site&locale=en<br /> <br /> pri vyplnovani nezadejte o prodlouzeni clenstvi ve VO<br /> <br /> po schvaleni budete muset chvilku pockat, nez se klic prenese na<br /> repozitar infinity<br /> <br /> 6) instalace zakladnich buildu<br /> <br /> $ ams-personal addcorebuilds<br /> <br /> 7) instalace vlastnich buildu nebo balicku, napr.:<br /> <br /> $ ams-personal addmodule vmd<br /> <br /> nebo<br /> <br /> $ ams-personal addbuilds orca:4.0.0:x86_64:para # akolo 10 GB!!!<br /> <br /> Seznam buildu je dostupny v iSoftrepo:<br /> https://lcc.ncbr.muni.cz/whitezone/development/infinity/isoftrepo/fcgi-bin/isoftrepo.fcgi</div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=Infinity_Personal&diff=246 Infinity Personal 2024-02-06T12:25:46Z

<p>Kulhanek: </p> <hr /> <div>[[Documentation]] / [[Activation, Deactivation, and Installation]] / [[Infinity Personal]] __NOEDITSECTION__<br /> ----<br /> <br /> ==1. Register==<br /> <br /> First, the user must join the Infinity Personal group. <br /> <br /> <span class="plainlinks">[https://perun.cesnet.cz/allfed/registrar/?vo=VO_muni_ncbr&group=srv:lcc-infinity-personal&locale=en <span class="mw-ui-button mw-ui-constructive mw-ui-small">Register into Infinity Personal group</span>]</span></div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=Infinity_Personal&diff=245 Infinity Personal 2024-02-06T12:24:46Z

<p>Kulhanek: Created page with "Documentation / Activation, Deactivation, and Installation / Infinity Personal __NOEDITSECTION__ ----"</p> <hr /> <div>[[Documentation]] / [[Activation, Deactivation, and Installation]] / [[Infinity Personal]] __NOEDITSECTION__<br /> ----</div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=Template:Activation,_Deactivation,_and_Installation&diff=244 Template:Activation, Deactivation, and Installation 2024-02-06T12:24:17Z

<p>Kulhanek: </p> <hr /> <div>* Preinstalled sites<br /> ** [[Installation:NCBR Clusters|NCBR Clusters (WOLF, SOKAR, LCC, IVAVIK)]]<br /> ** [[Installation:CEITEC Clusters|CEITEC Clusters (ROBOX)]]<br /> ** [[Installation:MetaCentrum|MetaCentrum Supercomputing Centre]]<br /> * Personal and other sites<br /> ** [[Infinity Personal]]<br /> ** Installation From Scratch</div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=News&diff=243 News 2024-02-06T08:10:17Z

<p>Kulhanek: </p> <hr /> <div>[[Documentation]] / [[News]] __NOEDITSECTION__<br /> ----<br /> ==2024==<br /> * 2024-01-24 AMS(9.x)/ABS(4.x) deployed on the SOKAR cluster<br /> * 2024-01-22 AMS(9.x)/ABS(4.x) deployed on the IVAVIK cluster<br /> * 2024-01-21 [https://infinity.ncbr.muni.cz/isoftrepo/fcgi-bin/isoftrepo.fcgi iSoftRepo] web service installed<br /> * 2024-01-20 AMS(9.x)/ABS(4.x) deployed on the WOLF cluster<br /> * 2024-01-15 AMS(9.x)/ABS(4.x) deployed on the LCC cluster<br /> * [[2024-01 New major version AMS(9.x)/ABS(4.x)]] - Deployment Schedule</div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=Documentation&diff=242 Documentation 2024-02-06T07:07:17Z

<p>Kulhanek: </p> <hr /> <div><templatestyles src="Template:Main_page/styles.css" /> __NOTOC__ __NOEDITSECTION__<br /> <div id="audiences" class="mainpage_row"><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Book-learn-volume-manual-svgrepo-com1.svg|20px|middle|link=]]</span><span>User Manual</span></h3><br /> <div id="mainpage-admins" title="system administrators" class="items"><br /> {{UserMan}}<br /> </div><br /> </div><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Newspaper-6-svgrepo-com.svg|20px|middle|link=]]</span><span>News</span></h3><br /> <div id="mainpage-admins" title="system administrators" class="items"><br /> * [[2024-01 New major version AMS(9.x)/ABS(4.x)|2024-02-05 Removal of the old Infinity AMS(8.x)/ABS(3.x)]]<br /> * 2024-01-24 AMS(9.x)/ABS(4.x) deployed on the SOKAR cluster<br /> * 2024-01-22 AMS(9.x)/ABS(4.x) deployed on the IVAVIK cluster<br /> * 2024-01-21 [https://infinity.ncbr.muni.cz/isoftrepo/fcgi-bin/isoftrepo.fcgi iSoftRepo] web service installed<br /> <span class="plainlinks">[[News | <span class="mw-ui-button mw-ui-constructive mw-ui-small">More news</span>]]</span><br /> </div><br /> </div><br /> </div><br /> <br /> <div style="clear: both;"></div><br /> <br /> <div id="audiences" class="mainpage_row"><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Screen-computer-config-configuration-svgrepo-com.svg|20px|middle|link=]]</span><span>Activation, Deactivation, and Installation</span></h3><br /> <div id="mainpage-admins" title="system administrators" class="items"><br /> {{Activation, Deactivation, and Installation}}<br /> </div><br /> </div><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Reference-svgrepo-com.svg|20px|middle|link=]]</span><span>Reference Manual</span></h3><br /> <div id="mainpage-admins" title="system administrators" class="items"><br /> {{RefMan}}<br /> </div><br /> </div><br /> </div></div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=Documentation&diff=241 Documentation 2024-01-24T20:26:32Z

<p>Kulhanek: </p> <hr /> <div><templatestyles src="Template:Main_page/styles.css" /> __NOTOC__ __NOEDITSECTION__<br /> <div id="audiences" class="mainpage_row"><br /> <br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:About-faq-help-question-svgrepo-com.svg|20px|middle|link=]]</span><span>Transition to New Infinity Version</span></h3><br /> <div id="mainpage-admins" title="system administrators" class="items"><br /> * WOLF, SOKAR, LCC, IVAVIK<br /> ** the new version of Infinity was already deployed<br /> * ROBOX<br /> ** ask your supervisor or the cluster administrator<br /> * '''MetaCentrum'''<br /> ** first, purge all jobs from the batch systems (either wait until they finish or kill them)<br /> ** '''[https://infinity.ncbr.muni.cz/index.php?lang=en&action=main&show=mailman register to the Infinity mailing list]''' (this step is mandatory)<br /> ** then, [[Installation:MetaCentrum|reactivate the Infinity]], use the '''metavo-ams-9.0''' profile<br /> <pre><br /> $ /software/ncbr/infiboot/infinity-activate <br /> <br /> >>> ERROR: The activation profile is required!<br /> Usage: /software/ncbr/infiboot/infinity-activate <profile><br /> <br /> Supported profiles are:<br /> <br /> (removed for clarity)<br /> <br /> ** metavo-ams-9.0<br /> The profile activates the next major version of Infinity on the MetaCentrum<br /> VO resources. This version comprises Advanced Module System v9.x and<br /> Advanced Batch System v4.x.<br /> <br /> ** metavo-remove<br /> <br /> (removed for clarity)<br /> </pre> <br /> </div><br /> </div><br /> </div><br /> <br /> <div id="audiences" class="mainpage_row"><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Book-learn-volume-manual-svgrepo-com1.svg|20px|middle|link=]]</span><span>User Manual</span></h3><br /> <div id="mainpage-admins" title="system administrators" class="items"><br /> {{UserMan}}<br /> </div><br /> </div><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Newspaper-6-svgrepo-com.svg|20px|middle|link=]]</span><span>News</span></h3><br /> <div id="mainpage-admins" title="system administrators" class="items"><br /> * <span style="background:yellow; font-weight: bold;">[[2024-01 New major version AMS(9.x)/ABS(4.x)|2024-02-05 Removal of the old Infinity AMS(8.x)/ABS(3.x)]]</span><br /> * 2024-01-24 AMS(9.x)/ABS(4.x) deployed on the SOKAR cluster<br /> * 2024-01-22 AMS(9.x)/ABS(4.x) deployed on the IVAVIK cluster<br /> * 2024-01-21 [https://infinity.ncbr.muni.cz/isoftrepo/fcgi-bin/isoftrepo.fcgi iSoftRepo] web service installed<br /> <span class="plainlinks">[[News | <span class="mw-ui-button mw-ui-constructive mw-ui-small">More news</span>]]</span><br /> </div><br /> </div><br /> </div><br /> <br /> <div style="clear: both;"></div><br /> <br /> <div id="audiences" class="mainpage_row"><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Screen-computer-config-configuration-svgrepo-com.svg|20px|middle|link=]]</span><span>Activation, Deactivation, and Installation</span></h3><br /> <div id="mainpage-admins" title="system administrators" class="items"><br /> {{Activation, Deactivation, and Installation}}<br /> </div><br /> </div><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Reference-svgrepo-com.svg|20px|middle|link=]]</span><span>Reference Manual</span></h3><br /> <div id="mainpage-admins" title="system administrators" class="items"><br /> {{RefMan}}<br /> </div><br /> </div><br /> </div></div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=Documentation&diff=240 Documentation 2024-01-24T20:20:40Z

<p>Kulhanek: </p> <hr /> <div><templatestyles src="Template:Main_page/styles.css" /> __NOTOC__ __NOEDITSECTION__<br /> <div id="audiences" class="mainpage_row"><br /> <br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:About-faq-help-question-svgrepo-com.svg|20px|middle|link=]]</span><span>Transition to New Infinity Version</span></h3><br /> <div id="mainpage-admins" title="system administrators" class="items"><br /> * WOLF, SOKAR, LCC, IVAVIK<br /> ** the new version of Infinity was already cleanly deployed<br /> * ROBOX<br /> ** ask your supervisor or the cluster administrator<br /> * '''MetaCentrum'''<br /> ** first, purge all jobs from the batch systems (either wait until they finish or kill them)<br /> ** '''[https://infinity.ncbr.muni.cz/index.php?lang=en&action=main&show=mailman register to the Infinity mailing list]''' (this step is mandatory)<br /> ** then, [[Installation:MetaCentrum|reactivate the Infinity]], use the '''metavo-ams-9.0''' profile<br /> <pre><br /> $ /software/ncbr/infiboot/infinity-activate <br /> <br /> >>> ERROR: The activation profile is required!<br /> Usage: /software/ncbr/infiboot/infinity-activate <profile><br /> <br /> Supported profiles are:<br /> <br /> (removed for clarity)<br /> <br /> ** metavo-ams-9.0<br /> The profile activates the next major version of Infinity on the MetaCentrum<br /> VO resources. This version comprises Advanced Module System v9.x and<br /> Advanced Batch System v4.x.<br /> <br /> ** metavo-remove<br /> <br /> (removed for clarity)<br /> </pre> <br /> </div><br /> </div><br /> </div><br /> <br /> <div id="audiences" class="mainpage_row"><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Book-learn-volume-manual-svgrepo-com1.svg|20px|middle|link=]]</span><span>User Manual</span></h3><br /> <div id="mainpage-admins" title="system administrators" class="items"><br /> {{UserMan}}<br /> </div><br /> </div><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Newspaper-6-svgrepo-com.svg|20px|middle|link=]]</span><span>News</span></h3><br /> <div id="mainpage-admins" title="system administrators" class="items"><br /> * <span style="background:yellow; font-weight: bold;">[[2024-01 New major version AMS(9.x)/ABS(4.x)|2024-02-05 Removal of the old Infinity AMS(8.x)/ABS(3.x)]]</span><br /> * 2024-01-24 AMS(9.x)/ABS(4.x) deployed on the SOKAR cluster<br /> * 2024-01-22 AMS(9.x)/ABS(4.x) deployed on the IVAVIK cluster<br /> * 2024-01-21 [https://infinity.ncbr.muni.cz/isoftrepo/fcgi-bin/isoftrepo.fcgi iSoftRepo] web service installed<br /> <span class="plainlinks">[[News | <span class="mw-ui-button mw-ui-constructive mw-ui-small">More news</span>]]</span><br /> </div><br /> </div><br /> </div><br /> <br /> <div style="clear: both;"></div><br /> <br /> <div id="audiences" class="mainpage_row"><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Screen-computer-config-configuration-svgrepo-com.svg|20px|middle|link=]]</span><span>Activation, Deactivation, and Installation</span></h3><br /> <div id="mainpage-admins" title="system administrators" class="items"><br /> {{Activation, Deactivation, and Installation}}<br /> </div><br /> </div><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Reference-svgrepo-com.svg|20px|middle|link=]]</span><span>Reference Manual</span></h3><br /> <div id="mainpage-admins" title="system administrators" class="items"><br /> {{RefMan}}<br /> </div><br /> </div><br /> </div></div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=Documentation&diff=239 Documentation 2024-01-24T20:04:04Z

<p>Kulhanek: </p> <hr /> <div><templatestyles src="Template:Main_page/styles.css" /> __NOTOC__ __NOEDITSECTION__<br /> <div id="audiences" class="mainpage_row"><br /> <br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:About-faq-help-question-svgrepo-com.svg|20px|middle|link=]]</span><span>Transition to New Infinity Version</span></h3><br /> <div id="mainpage-admins" title="system administrators" class="items"><br /> * WOLF, SOKAR, LCC, IVAVIK<br /> ** the new version of Infinity was already cleanly deployed<br /> * ROBOX<br /> ** ask your supervisor or the cluster administrator<br /> * '''MetaCentrum'''<br /> ** first, purge all jobs from the batch systems (either wait until they finish or kill them)<br /> ** then, [[Installation:MetaCentrum|reactivate the Infinity]], use the '''metavo-ams-9.0''' profile<br /> <pre><br /> $ /software/ncbr/infiboot/infinity-activate <br /> <br /> >>> ERROR: The activation profile is required!<br /> Usage: /software/ncbr/infiboot/infinity-activate <profile><br /> <br /> Supported profiles are:<br /> <br /> (removed for clarity)<br /> <br /> ** metavo-ams-9.0<br /> The profile activates the next major version of Infinity on the MetaCentrum<br /> VO resources. This version comprises Advanced Module System v9.x and<br /> Advanced Batch System v4.x.<br /> <br /> ** metavo-remove<br /> <br /> (removed for clarity)<br /> </pre> <br /> </div><br /> </div><br /> </div><br /> <br /> <div id="audiences" class="mainpage_row"><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Book-learn-volume-manual-svgrepo-com1.svg|20px|middle|link=]]</span><span>User Manual</span></h3><br /> <div id="mainpage-admins" title="system administrators" class="items"><br /> {{UserMan}}<br /> </div><br /> </div><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Newspaper-6-svgrepo-com.svg|20px|middle|link=]]</span><span>News</span></h3><br /> <div id="mainpage-admins" title="system administrators" class="items"><br /> * <span style="background:yellow; font-weight: bold;">[[2024-01 New major version AMS(9.x)/ABS(4.x)|2024-02-05 Removal of the old Infinity AMS(8.x)/ABS(3.x)]]</span><br /> * 2024-01-24 AMS(9.x)/ABS(4.x) deployed on the SOKAR cluster<br /> * 2024-01-22 AMS(9.x)/ABS(4.x) deployed on the IVAVIK cluster<br /> * 2024-01-21 [https://infinity.ncbr.muni.cz/isoftrepo/fcgi-bin/isoftrepo.fcgi iSoftRepo] web service installed<br /> <span class="plainlinks">[[News | <span class="mw-ui-button mw-ui-constructive mw-ui-small">More news</span>]]</span><br /> </div><br /> </div><br /> </div><br /> <br /> <div style="clear: both;"></div><br /> <br /> <div id="audiences" class="mainpage_row"><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Screen-computer-config-configuration-svgrepo-com.svg|20px|middle|link=]]</span><span>Activation, Deactivation, and Installation</span></h3><br /> <div id="mainpage-admins" title="system administrators" class="items"><br /> {{Activation, Deactivation, and Installation}}<br /> </div><br /> </div><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Reference-svgrepo-com.svg|20px|middle|link=]]</span><span>Reference Manual</span></h3><br /> <div id="mainpage-admins" title="system administrators" class="items"><br /> {{RefMan}}<br /> </div><br /> </div><br /> </div></div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=Documentation&diff=238 Documentation 2024-01-24T20:02:26Z

<p>Kulhanek: </p> <hr /> <div><templatestyles src="Template:Main_page/styles.css" /> __NOTOC__ __NOEDITSECTION__<br /> <div id="audiences" class="mainpage_row"><br /> <br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:About-faq-help-question-svgrepo-com.svg|20px|middle|link=]]</span><span>Transition to New Infinity Version</span></h3><br /> <div id="mainpage-admins" title="system administrators" class="items"><br /> * WOLF, SOKAR, LCC, IVAVIK<br /> ** the new version of Infinity was already cleanly deployed<br /> * ROBOX<br /> ** ask your supervisor or the cluster administrator<br /> * '''MetaCentrum'''<br /> ** first, purge all jobs from the batch systems (either wait until they finish or kill them)<br /> ** then, reactivate the Infinity, use the metavo-ams-9.0 profile<br /> <pre><br /> $ /software/ncbr/infiboot/infinity-activate <br /> <br /> >>> ERROR: The activation profile is required!<br /> Usage: /software/ncbr/infiboot/infinity-activate <profile><br /> <br /> Supported profiles are:<br /> <br /> (removed for clarity)<br /> <br /> ** metavo-ams-9.0<br /> The profile activates the next major version of Infinity on the MetaCentrum<br /> VO resources. This version comprises Advanced Module System v9.x and<br /> Advanced Batch System v4.x.<br /> <br /> ** metavo-remove<br /> <br /> (removed for clarity)<br /> </pre> <br /> </div><br /> </div><br /> </div><br /> <br /> <div id="audiences" class="mainpage_row"><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Book-learn-volume-manual-svgrepo-com1.svg|20px|middle|link=]]</span><span>User Manual</span></h3><br /> <div id="mainpage-admins" title="system administrators" class="items"><br /> {{UserMan}}<br /> </div><br /> </div><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Newspaper-6-svgrepo-com.svg|20px|middle|link=]]</span><span>News</span></h3><br /> <div id="mainpage-admins" title="system administrators" class="items"><br /> * <span style="background:yellow; font-weight: bold;">[[2024-01 New major version AMS(9.x)/ABS(4.x)|2024-02-05 Removal of the old Infinity AMS(8.x)/ABS(3.x)]]</span><br /> * 2024-01-24 AMS(9.x)/ABS(4.x) deployed on the SOKAR cluster<br /> * 2024-01-22 AMS(9.x)/ABS(4.x) deployed on the IVAVIK cluster<br /> * 2024-01-21 [https://infinity.ncbr.muni.cz/isoftrepo/fcgi-bin/isoftrepo.fcgi iSoftRepo] web service installed<br /> <span class="plainlinks">[[News | <span class="mw-ui-button mw-ui-constructive mw-ui-small">More news</span>]]</span><br /> </div><br /> </div><br /> </div><br /> <br /> <div style="clear: both;"></div><br /> <br /> <div id="audiences" class="mainpage_row"><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Screen-computer-config-configuration-svgrepo-com.svg|20px|middle|link=]]</span><span>Activation, Deactivation, and Installation</span></h3><br /> <div id="mainpage-admins" title="system administrators" class="items"><br /> {{Activation, Deactivation, and Installation}}<br /> </div><br /> </div><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Reference-svgrepo-com.svg|20px|middle|link=]]</span><span>Reference Manual</span></h3><br /> <div id="mainpage-admins" title="system administrators" class="items"><br /> {{RefMan}}<br /> </div><br /> </div><br /> </div></div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=Documentation&diff=237 Documentation 2024-01-24T19:51:46Z

<p>Kulhanek: </p> <hr /> <div><templatestyles src="Template:Main_page/styles.css" /> __NOTOC__ __NOEDITSECTION__<br /> <br /> <br /> <div id="audiences" class="mainpage_row"><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Book-learn-volume-manual-svgrepo-com1.svg|20px|middle|link=]]</span><span>User Manual</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> {{UserMan}}<br /> </div><br /> </div><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Newspaper-6-svgrepo-com.svg|20px|middle|link=]]</span><span>News</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> * <span style="background:yellow; font-weight: bold;">[[2024-01 New major version AMS(9.x)/ABS(4.x)|2024-02-05 Removal of the old Infinity AMS(8.x)/ABS(3.x)]]</span><br /> * 2024-01-24 AMS(9.x)/ABS(4.x) deployed on the SOKAR cluster<br /> * 2024-01-22 AMS(9.x)/ABS(4.x) deployed on the IVAVIK cluster<br /> * 2024-01-21 [https://infinity.ncbr.muni.cz/isoftrepo/fcgi-bin/isoftrepo.fcgi iSoftRepo] web service installed<br /> <span class="plainlinks">[[News | <span class="mw-ui-button mw-ui-constructive mw-ui-small">More news</span>]]</span><br /> </div><br /> </div><br /> </div><br /> <br /> <div style="clear: both;"></div><br /> <br /> <div id="audiences" class="mainpage_row"><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Screen-computer-config-configuration-svgrepo-com.svg|20px|middle|link=]]</span><span>Activation, Deactivation, and Installation</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> {{Activation, Deactivation, and Installation}}<br /> </div><br /> </div><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Reference-svgrepo-com.svg|20px|middle|link=]]</span><span>Reference Manual</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> {{RefMan}}<br /> </div><br /> </div><br /> </div></div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=Documentation&diff=236 Documentation 2024-01-24T19:48:21Z

<p>Kulhanek: </p> <hr /> <div><templatestyles src="Template:Main_page/styles.css" /> __NOTOC__ __NOEDITSECTION__<br /> <br /> <br /> <div id="audiences" class="mainpage_row"><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Book-learn-volume-manual-svgrepo-com1.svg|20px|middle|link=]]</span><span>User Manual</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> {{UserMan}}<br /> </div><br /> </div><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Newspaper-6-svgrepo-com.svg|20px|middle|link=]]</span><span>News</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> * <span style="color:red; font-weight: bold;">[[2024-02-05 Removal of the old Infinity AMS(8.x)/ABS(3.x)]]</span><br /> * 2024-01-24 AMS(9.x)/ABS(4.x) deployed on the SOKAR cluster<br /> * 2024-01-22 AMS(9.x)/ABS(4.x) deployed on the IVAVIK cluster<br /> * 2024-01-21 [https://infinity.ncbr.muni.cz/isoftrepo/fcgi-bin/isoftrepo.fcgi iSoftRepo] web service installed<br /> <span class="plainlinks">[[News | <span class="mw-ui-button mw-ui-constructive mw-ui-small">More news</span>]]</span><br /> </div><br /> </div><br /> </div><br /> <br /> <div style="clear: both;"></div><br /> <br /> <div id="audiences" class="mainpage_row"><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Screen-computer-config-configuration-svgrepo-com.svg|20px|middle|link=]]</span><span>Activation, Deactivation, and Installation</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> {{Activation, Deactivation, and Installation}}<br /> </div><br /> </div><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Reference-svgrepo-com.svg|20px|middle|link=]]</span><span>Reference Manual</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> {{RefMan}}<br /> </div><br /> </div><br /> </div></div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=2024-01_New_major_version_AMS(9.x)/ABS(4.x)&diff=235 2024-01 New major version AMS(9.x)/ABS(4.x) 2024-01-24T19:45:14Z

<p>Kulhanek: </p> <hr /> <div>[[Documentation]] / [[News]] / [[2024-01 New major version AMS(9.x)/ABS(4.x)]] __NOEDITSECTION__<br /> ----<br /> A new version of Infinity will be deployed soon. <br /> <br /> The current users must register on the Infinity mailing list to receive important announcements. This is especially important for MetaCentrum members.<br /> <br /> <span class="plainlinks">[https://perun.cesnet.cz/allfed/registrar/?vo=VO_muni_ncbr&group=srv:lcc-infinity&locale=en <span class="mw-ui-button mw-ui-constructive mw-ui-small">Register into Infinity mailing list</span>]</span><br /> <br /> If you do not want to use the Infinity anymore, you can uninstall it in MetaCentrum (CERIT-SC) by running the following command:<br /> <br /> $ /software/ncbr/infiboot/infinity-activate metavo-remove<br /> <br /> On other sites (WOLF, LCC, IVAVIK, SOKAR, ROBOX), the Infinity environment is mandatory and should not be deactivated.<br /> <br /> == Tentative Schedule ==<br /> This schedule can change. The aim is to deploy the new versions as soon as possible. Due to technical reasons, the previous AMS and ABS versions will not be kept for a long time.<br /> * January 2024<br /> ** testing<br /> ** 2024-01-04 - software repository cleanup I, report possible problems to LCC support<br /> ** 2024-01-08 - software repository cleanup II (cats, pmflib related modules, x-ray software)<br /> ** 2024-01-09 - software repository cleanup III (gromacs, plumed)<br /> ** 2024-01-10 - ssh wrapper updated<br /> ** 2024-01-15 - software repository cleanup IV (cleanup of old module locations)<br /> ** 2024-01-15 - AMS9.x/ABS4.x deployed on the LCC cluster for beta testing<br /> ** 2024-01-17 - software repository cleanup V (finalization)<br /> ** 2024-01-20 - AMS9.x/ABS4.x deployed on the WOLF cluster for beta testing<br /> ** 2024-01-21 - [https://infinity.ncbr.muni.cz/isoftrepo/fcgi-bin/isoftrepo.fcgi iSoftRepo] installed<br /> ** 2024-01-22 - AMS9.x/ABS4.x deployed on the IVAVIK cluster<br /> ** 2024-01-24 - AMS9.x/ABS4.x deployed on the SOKAR cluster<br /> <br /> * February 2024<br /> ** <span style="color: red; font-weight: bold;">2024-02-05 - removal of the old Infinity (AMS8.x/ABS3.x)</span></div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=News&diff=234 News 2024-01-24T19:42:51Z

<p>Kulhanek: </p> <hr /> <div>[[Documentation]] / [[News]] __NOEDITSECTION__<br /> ----<br /> ==2024==<br /> * 2024-01-24 AMS(9.x)/ABS(4.x) deployed on the SOKAR cluster<br /> * 2024-01-22 AMS(9.x)/ABS(4.x) deployed on the IVAVIK cluster<br /> * 2024-01-21 [https://infinity.ncbr.muni.cz/isoftrepo/fcgi-bin/isoftrepo.fcgi iSoftRepo] web service installed<br /> * 2024-01-20 AMS(9.x)/ABS(4.x) deployed on the WOLF cluster<br /> * 2024-01-15 AMS(9.x)/ABS(4.x) deployed on the LCC cluster<br /> * <span style="color:red; font-weight: bold;">[[2024-01 New major version AMS(9.x)/ABS(4.x)]] - Deployment Schedule</span></div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=News&diff=233 News 2024-01-24T19:42:29Z

<p>Kulhanek: </p> <hr /> <div>[[Documentation]] / [[News]] __NOEDITSECTION__<br /> ----<br /> ==2024==<br /> * 2024-01-21 [https://infinity.ncbr.muni.cz/isoftrepo/fcgi-bin/isoftrepo.fcgi iSoftRepo] web service installed<br /> * 2024-01-20 AMS(9.x)/ABS(4.x) deployed on the WOLF cluster<br /> * 2024-01-15 AMS(9.x)/ABS(4.x) deployed on the LCC cluster<br /> * <span style="color:red; font-weight: bold;">[[2024-01 New major version AMS(9.x)/ABS(4.x)]] - Deployment Schedule</span></div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=Documentation&diff=232 Documentation 2024-01-24T19:42:06Z

<p>Kulhanek: </p> <hr /> <div><templatestyles src="Template:Main_page/styles.css" /> __NOTOC__ __NOEDITSECTION__<br /> <br /> <br /> <div id="audiences" class="mainpage_row"><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Book-learn-volume-manual-svgrepo-com1.svg|20px|middle|link=]]</span><span>User Manual</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> {{UserMan}}<br /> </div><br /> </div><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Newspaper-6-svgrepo-com.svg|20px|middle|link=]]</span><span>News</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> * 2024-01-24 AMS(9.x)/ABS(4.x) deployed on the SOKAR cluster<br /> * 2024-01-22 AMS(9.x)/ABS(4.x) deployed on the IVAVIK cluster<br /> * 2024-01-21 [https://infinity.ncbr.muni.cz/isoftrepo/fcgi-bin/isoftrepo.fcgi iSoftRepo] web service installed<br /> <span class="plainlinks">[[News | <span class="mw-ui-button mw-ui-constructive mw-ui-small">More news</span>]]</span><br /> </div><br /> </div><br /> </div><br /> <br /> <div style="clear: both;"></div><br /> <br /> <div id="audiences" class="mainpage_row"><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Screen-computer-config-configuration-svgrepo-com.svg|20px|middle|link=]]</span><span>Activation, Deactivation, and Installation</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> {{Activation, Deactivation, and Installation}}<br /> </div><br /> </div><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Reference-svgrepo-com.svg|20px|middle|link=]]</span><span>Reference Manual</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> {{RefMan}}<br /> </div><br /> </div><br /> </div></div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=Documentation&diff=231 Documentation 2024-01-24T19:41:45Z

<p>Kulhanek: </p> <hr /> <div><templatestyles src="Template:Main_page/styles.css" /> __NOTOC__ __NOEDITSECTION__<br /> <br /> <br /> <div id="audiences" class="mainpage_row"><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Book-learn-volume-manual-svgrepo-com1.svg|20px|middle|link=]]</span><span>User Manual</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> {{UserMan}}<br /> </div><br /> </div><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Newspaper-6-svgrepo-com.svg|20px|middle|link=]]</span><span>News</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> * 2024-01-24 AMS(9.x)/ABS(4.x) deployed on the SOKAR cluster<br /> * 2024-01-22 AMS(9.x)/ABS(4.x) deployed on the IVAVIK cluster<br /> * 2024-01-21 [https://infinity.ncbr.muni.cz/isoftrepo/fcgi-bin/isoftrepo.fcgi iSoftRepo] web service installed<br /> </div><br /> </div><br /> </div><br /> <br /> <div style="clear: both;"></div><br /> <br /> <div id="audiences" class="mainpage_row"><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Screen-computer-config-configuration-svgrepo-com.svg|20px|middle|link=]]</span><span>Activation, Deactivation, and Installation</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> {{Activation, Deactivation, and Installation}}<br /> </div><br /> </div><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Reference-svgrepo-com.svg|20px|middle|link=]]</span><span>Reference Manual</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> {{RefMan}}<br /> </div><br /> </div><br /> </div></div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=News&diff=230 News 2024-01-21T10:42:27Z

<p>Kulhanek: </p> <hr /> <div>[[Documentation]] / [[News]] __NOEDITSECTION__<br /> ----<br /> ==2024==<br /> * 2024-01-21 [https://infinity.ncbr.muni.cz/isoftrepo/fcgi-bin/isoftrepo.fcgi iSoftRepo] web service installed<br /> * 2024-01-20 AMS(9.x)/ABS(4.x) deployed on the WOLF cluster<br /> * [[2024-01 New major version AMS(9.x)/ABS(4.x)]] - Deployment Schedule</div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=Documentation&diff=229 Documentation 2024-01-21T10:42:16Z

<p>Kulhanek: </p> <hr /> <div><templatestyles src="Template:Main_page/styles.css" /> __NOTOC__ __NOEDITSECTION__<br /> <br /> <br /> <div id="audiences" class="mainpage_row"><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Book-learn-volume-manual-svgrepo-com1.svg|20px|middle|link=]]</span><span>User Manual</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> {{UserMan}}<br /> </div><br /> </div><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Newspaper-6-svgrepo-com.svg|20px|middle|link=]]</span><span>News</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> * 2024-01-21 [https://infinity.ncbr.muni.cz/isoftrepo/fcgi-bin/isoftrepo.fcgi iSoftRepo] web service installed<br /> * 2024-01-20 AMS(9.x)/ABS(4.x) deployed on the WOLF cluster<br /> * <span style="color:red; font-weight: bold;">[[2024-01 New major version AMS(9.x)/ABS(4.x)]] - Deployment Schedule</span><br /> <span class="plainlinks">[[News | <span class="mw-ui-button mw-ui-constructive mw-ui-small">More news</span>]]</span><br /> </div><br /> </div><br /> </div><br /> <br /> <div style="clear: both;"></div><br /> <br /> <div id="audiences" class="mainpage_row"><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Screen-computer-config-configuration-svgrepo-com.svg|20px|middle|link=]]</span><span>Activation, Deactivation, and Installation</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> {{Activation, Deactivation, and Installation}}<br /> </div><br /> </div><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Reference-svgrepo-com.svg|20px|middle|link=]]</span><span>Reference Manual</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> {{RefMan}}<br /> </div><br /> </div><br /> </div></div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=2024-01_New_major_version_AMS(9.x)/ABS(4.x)&diff=228 2024-01 New major version AMS(9.x)/ABS(4.x) 2024-01-21T10:41:40Z

<p>Kulhanek: </p> <hr /> <div>[[Documentation]] / [[News]] / [[2024-01 New major version AMS(9.x)/ABS(4.x)]] __NOEDITSECTION__<br /> ----<br /> A new version of Infinity will be deployed soon. <br /> <br /> The current users must register on the Infinity mailing list to receive important announcements. This is especially important for MetaCentrum members.<br /> <br /> <span class="plainlinks">[https://perun.cesnet.cz/allfed/registrar/?vo=VO_muni_ncbr&group=srv:lcc-infinity&locale=en <span class="mw-ui-button mw-ui-constructive mw-ui-small">Register into Infinity mailing list</span>]</span><br /> <br /> If you do not want to use the Infinity anymore, you can uninstall it in MetaCentrum (CERIT-SC) by running the following command:<br /> <br /> $ /software/ncbr/infiboot/infinity-activate metavo-remove<br /> <br /> On other sites (WOLF, LCC, IVAVIK, SOKAR, ROBOX), the Infinity environment is mandatory and should not be deactivated.<br /> <br /> == Tentative Schedule ==<br /> This schedule can change. The aim is to deploy the new versions as soon as possible. Due to technical reasons, the previous AMS and ABS versions will not be kept for a long time.<br /> * January 2024<br /> ** testing<br /> ** 2024-01-04 - software repository cleanup I, report possible problems to LCC support<br /> ** 2024-01-08 - software repository cleanup II (cats, pmflib related modules, x-ray software)<br /> ** 2024-01-09 - software repository cleanup III (gromacs, plumed)<br /> ** 2024-01-10 - ssh wrapper updated<br /> ** 2024-01-15 - software repository cleanup IV (cleanup of old module locations)<br /> ** 2024-01-15 - AMS9.x/ABS4.x deployed on the LCC cluster for beta testing<br /> ** 2024-01-17 - software repository cleanup V (finalization)<br /> ** 2024-01-20 - AMS9.x/ABS4.x deployed on the WOLF cluster for beta testing<br /> ** 2024-01-21 - [https://infinity.ncbr.muni.cz/isoftrepo/fcgi-bin/isoftrepo.fcgi iSoftRepo] installed<br /> * February 2024<br /> ** removal of the old Infinity (AMS8.x/ABS3.x)</div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=Documentation&diff=227 Documentation 2024-01-21T10:40:01Z

<p>Kulhanek: </p> <hr /> <div><templatestyles src="Template:Main_page/styles.css" /> __NOTOC__ __NOEDITSECTION__<br /> <br /> <br /> <div id="audiences" class="mainpage_row"><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Book-learn-volume-manual-svgrepo-com1.svg|20px|middle|link=]]</span><span>User Manual</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> {{UserMan}}<br /> </div><br /> </div><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Newspaper-6-svgrepo-com.svg|20px|middle|link=]]</span><span>News</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> * 2024-01-21 [https://infinity.ncbr.muni.cz/isoftrepo/fcgi-bin/isoftrepo.fcgi iSoftRepo web service installed]<br /> * 2024-01-20 AMS(9.x)/ABS(4.x) deployed on the WOLF cluster<br /> * <span style="color:red; font-weight: bold;">[[2024-01 New major version AMS(9.x)/ABS(4.x)]] - Deployment Schedule</span><br /> <span class="plainlinks">[[News | <span class="mw-ui-button mw-ui-constructive mw-ui-small">More news</span>]]</span><br /> </div><br /> </div><br /> </div><br /> <br /> <div style="clear: both;"></div><br /> <br /> <div id="audiences" class="mainpage_row"><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Screen-computer-config-configuration-svgrepo-com.svg|20px|middle|link=]]</span><span>Activation, Deactivation, and Installation</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> {{Activation, Deactivation, and Installation}}<br /> </div><br /> </div><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Reference-svgrepo-com.svg|20px|middle|link=]]</span><span>Reference Manual</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> {{RefMan}}<br /> </div><br /> </div><br /> </div></div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=MediaWiki:Sidebar&diff=226 MediaWiki:Sidebar 2024-01-21T10:16:04Z

<p>Kulhanek: </p> <hr /> <div>* Navigation<br /> ** Documentation|Documentation<br /> ** https://infinity.ncbr.muni.cz | Home<br /> ** https://infinity.ncbr.muni.cz/bluezone/wiki94 | Edit<br /> * Mediawiki<br /> ** recentchanges-url|recentchanges<br /> ** helppage|help<br /> * SEARCH<br /> * TOOLBOX<br /> * LANGUAGES</div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=Installation:CEITEC_Clusters&diff=225 Installation:CEITEC Clusters 2024-01-18T15:11:33Z

<p>Kulhanek: </p> <hr /> <div>[[Documentation]] / [[Activation, Deactivation, and Installation]] / [[Installation:CEITEC Clusters | CEITEC Clusters]] __NOEDITSECTION__<br /> ----<br /> = ROBOX Cluster =<br /> LCC Support does not manage the ROBOX cluster. The following setup is a description of how the infinity should be properly activated. The real situation can strongly depend on the users and administrators of the cluster.<br /> <br /> == The system wide setup ==<br /> <br /> The activation script is in the file '''/etc/bashrc'''. This script has to be called from the user startup files, '''~/.bash_profile''' and '''~/.bashrc'''. The initial content of these files is stored in the '''/etc/skel''' directory. To assure that new users will get the proper version of these files, the contents of the '''/etc/skel''' directory must be updated.<br /> <br /> <pre><br /> $ cat /etc/bashrc <br /> <br /> # this is for non-interactive and interactive modes<br /> # AMS 9.0<br /> <br /> export AMS_HOST_GROUP=robox<br /> <br /> if [ "`id -u`" -gt 1000 ]; then<br /> if /usr/bin/test -f /software/ncbr/softmods/9.0/etc/boot/bashrc.ncbr<br /> then source /software/ncbr/softmods/9.0/etc/boot/bashrc.ncbr<br /> fi<br /> fi<br /> </pre><br /> <br /> <pre><br /> $ cat /etc/skel/.bash_profile<br /> # Standard NCBR .bash_profile<br /> <br /> # include .bashrc if it exists<br /> if [ -f ~/.bashrc ]; then<br /> . ~/.bashrc<br /> fi<br /> <br /> # set PATH so it includes user's private bin if it exists<br /> if [ -d ~/bin ] ; then<br /> PATH=~/bin:$PATH<br /> fi<br /> <br /> </pre><br /> <br /> <pre><br /> $ cat /etc/skel/.bashrc<br /> # Standard NCBR .bashrc<br /> <br /> # use system wide setup<br /> if [ -f /etc/bashrc ]; then<br /> . /etc/bashrc <br /> fi<br /> <br /> </pre><br /> <br /> The file '''/etc/skel/.profile''' must be deleted.<br /> <br /> == The user wide setup ==<br /> <br /> The Infinity requires standard NCBR startup files '''~/.bash_profile''' and '''~/.bashrc''', while the '''~/.profile''' file should not be present. Their contents must match the files' contents in the '''/etc/skel''' directory. If not, or if you accidentally remove or damage their contents, you can restore them by running the infinity-boot command. This must be done on ALL cluster computers. This operation is not handled by the script and thus rests on the user or the cluster administrator. <br /> <br /> <pre><br /> $ /software/ncbr/infiboot/infinity-activate general<br /> <br /> # ==============================================================================<br /> # Infinity - activating profile: general<br /> <br /> The profile restores the standard .bash_profile and .bashrc files used<br /> on the NCBR clusters administered by the LCC support (WOLF, SOKAR, IVAVIK,<br /> LCC). This profile should rarely be used, usually when the user damages<br /> these files.<br /> # ==============================================================================<br /> <br /> Activation of Infinity on local machine: robox ... success.<br /> <br /> All is done.<br /> <br /> WARNING: Please open a new terminal session to complete the Infinity profile 'general' activation procedure.<br /> <br /> </pre></div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=Installation:CEITEC_Clusters&diff=224 Installation:CEITEC Clusters 2024-01-18T15:04:49Z

<p>Kulhanek: </p> <hr /> <div>[[Documentation]] / [[Activation, Deactivation, and Installation]] / [[Installation:CEITEC Clusters | CEITEC Clusters]] __NOEDITSECTION__<br /> ----<br /> LCC Support does not manage the ROBOX cluster. The following setup is a description of how the infinity should be properly activated. The real situation can strongly depend on the users and administrators of the cluster.<br /> <br /> == The system wide setup ==<br /> <br /> The activation script is in the file '''/etc/bashrc'''. This script has to be called from the user startup files, '''~/.bash_profile''' and '''~/.bashrc'''. The initial content of these files is stored in the '''/etc/skel''' directory. To assure that new users will get the proper version of these files, the contents of the '''/etc/skel''' directory must be updated.<br /> <br /> <pre><br /> $ cat /etc/bashrc <br /> <br /> # this is for non-interactive and interactive modes<br /> # AMS 9.0<br /> <br /> export AMS_HOST_GROUP=robox<br /> <br /> if [ "`id -u`" -gt 1000 ]; then<br /> if /usr/bin/test -f /software/ncbr/softmods/9.0/etc/boot/bashrc.ncbr<br /> then source /software/ncbr/softmods/9.0/etc/boot/bashrc.ncbr<br /> fi<br /> fi<br /> </pre><br /> <br /> <pre><br /> $ cat /etc/skel/.bash_profile<br /> # Standard NCBR .bash_profile<br /> <br /> # include .bashrc if it exists<br /> if [ -f ~/.bashrc ]; then<br /> . ~/.bashrc<br /> fi<br /> <br /> # set PATH so it includes user's private bin if it exists<br /> if [ -d ~/bin ] ; then<br /> PATH=~/bin:$PATH<br /> fi<br /> <br /> </pre><br /> <br /> <pre><br /> $ cat /etc/skel/.bashrc<br /> # Standard NCBR .bashrc<br /> <br /> # use system wide setup<br /> if [ -f /etc/bashrc ]; then<br /> . /etc/bashrc <br /> fi<br /> <br /> </pre><br /> <br /> The file '''/etc/skel/.profile''' must be deleted.<br /> <br /> == The user wide setup ==<br /> <br /> The Infinity requires standard NCBR startup files '''~/.bash_profile''' and '''~/.bashrc''', while the '''~/.profile''' file should not be present. Their contents must match the files' contents in the '''/etc/skel''' directory. If not, or if you accidentally remove or damage their contents, you can restore them by running the infinity-boot command. This must be done on ALL cluster computers. This operation is not handled by the script and thus rests on the user or the cluster administrator. <br /> <br /> <pre><br /> $ /software/ncbr/infiboot/infinity-activate general<br /> <br /> # ==============================================================================<br /> # Infinity - activating profile: general<br /> <br /> The profile restores the standard .bash_profile and .bashrc files used<br /> on the NCBR clusters administered by the LCC support (WOLF, SOKAR, IVAVIK,<br /> LCC). This profile should rarely be used, usually when the user damages<br /> these files.<br /> # ==============================================================================<br /> <br /> Activation of Infinity on local machine: robox ... success.<br /> <br /> All is done.<br /> <br /> WARNING: Please open a new terminal session to complete the Infinity profile 'general' activation procedure.<br /> <br /> </pre></div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=RefMan:ABS_Commands&diff=223 RefMan:ABS Commands 2024-01-18T14:31:10Z

<p>Kulhanek: </p> <hr /> <div>[[Documentation]] / [[RefMan|Reference Manual]] / [[RefMan:ABS | Advanced Batch System]] / [[RefMan:ABS Commands | Commands]] __NOEDITSECTION__ __NOTOC__<br /> ----<br /> *[[_abs-cgen]]<br /> *[[abs-config]]<br /> *[[pkill]]<br /> *[[infinity-env]]<br /> *[[infinity-ijobs-finalize]]<br /> *[[infinity-ijobs-prepare]]<br /> *[[parchive]]<br /> *[[pjobs]]<br /> *[[pnodes]]<br /> *[[pqueues]]<br /> *[[presubmit]]<br /> *[[pstatus]]<br /> *[[pcollection]]<br /> *[[pgo]]<br /> *[[psync]]<br /> *[[infinity-ijobs-copy-into]]<br /> *[[infinity-ijobs-launch]]<br /> *[[paliases]]<br /> *[[pinfo]]<br /> *[[pkillall]]<br /> *[[pqstat]]<br /> *[[premovertf]]<br /> *[[psanitize]]<br /> *[[psubmit]]<br /> *[[abs-get-setup-item]]<br /> *[[abs-get-work-dir]]<br /> *[[abs-ijobs]]<br /> *[[abs-restore-env]]<br /> *[[abs-update-infofile]]</div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=RefMan:ABS_Commands&diff=222 RefMan:ABS Commands 2024-01-18T14:25:55Z

<p>Kulhanek: Created page with "Documentation / Reference Manual / Advanced Batch System / Commands __NOEDITSECTION__ __NOTOC__ ----"</p> <hr /> <div>[[Documentation]] / [[RefMan|Reference Manual]] / [[RefMan:ABS | Advanced Batch System]] / [[RefMan:ABS Commands | Commands]] __NOEDITSECTION__ __NOTOC__<br /> ----</div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=RefMan:ABS&diff=221 RefMan:ABS 2024-01-18T14:25:25Z

<p>Kulhanek: </p> <hr /> <div>[[Documentation]] / [[RefMan|Reference Manual]] / [[RefMan:ABS | Advanced Batch System]] __NOEDITSECTION__<br /> ----<br /> <br /> * [[RefMan:ABS Commands | Commands]]</div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=RefMan:AMS&diff=220 RefMan:AMS 2024-01-18T14:24:23Z

<p>Kulhanek: </p> <hr /> <div>[[Documentation]] / [[RefMan|Reference Manual]] / [[RefMan:AMS | Advanced Module System]] __NOEDITSECTION__<br /> ----<br /> <br /> * [[RefMan:AMS Commands | Commands]]</div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=RefMan:AMS_Commands&diff=219 RefMan:AMS Commands 2024-01-18T14:17:13Z

<p>Kulhanek: </p> <hr /> <div>[[Documentation]] / [[RefMan|Reference Manual]] / [[RefMan:AMS | Advanced Module System]] / [[RefMan:AMS Commands | Commands]] __NOEDITSECTION__ __NOTOC__<br /> ----<br /> ==User commands==<br /> <br /> {| class="wikitable"<br /> ! Command<br /> ! Description<br /> |-<br /> | [[site]]<br /> | manipulates with sites, which are virtual representations of computational resources<br /> |-<br /> | [[module]]<br /> | activate/deactivate software modules<br /> |-<br /> | [[ams-config]]<br /> | user configuration of AMS subsystem<br /> |-<br /> | [[amssetenv]]<br /> | setup available computational resources for parallel execution in interactive command line mode<br /> |}<br /> <br /> == Administration ==<br /> <br /> {| class="wikitable"<br /> ! Command<br /> ! Description<br /> |-<br /> | [[ams-bundle]]<br /> | manipulates with module bundles (collections of software modules) <br /> |-<br /> | [[ams-user]]<br /> | print information about the current user<br /> |-<br /> | [[ams-host]]<br /> | print information about the current host<br /> |}<br /> <br /> == Technical ==<br /> <br /> {| class="wikitable"<br /> ! Command<br /> ! Description<br /> |-<br /> | [[_ams-cgen]]<br /> | provide suggestions for bash-completion of AMS commands <br /> |-<br /> | [[_ams-module-var]]<br /> | manipulate with environment variables<br /> |-<br /> | [[module-add-stat]]<br /> | send statistical data to the ams-isoftstat server<br /> |}</div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=Documentation&diff=218 Documentation 2024-01-18T13:50:51Z

<p>Kulhanek: </p> <hr /> <div><templatestyles src="Template:Main_page/styles.css" /> __NOTOC__ __NOEDITSECTION__<br /> <br /> <br /> <div id="audiences" class="mainpage_row"><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Book-learn-volume-manual-svgrepo-com1.svg|20px|middle|link=]]</span><span>User Manual</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> {{UserMan}}<br /> </div><br /> </div><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Newspaper-6-svgrepo-com.svg|20px|middle|link=]]</span><span>News</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> * [[2024-01 New major version AMS(9.x)/ABS(4.x)]] - Deployment Schedule<br /> <span class="plainlinks">[[News | <span class="mw-ui-button mw-ui-constructive mw-ui-small">More news</span>]]</span><br /> </div><br /> </div><br /> </div><br /> <br /> <div style="clear: both;"></div><br /> <br /> <div id="audiences" class="mainpage_row"><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Screen-computer-config-configuration-svgrepo-com.svg|20px|middle|link=]]</span><span>Activation, Deactivation, and Installation</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> {{Activation, Deactivation, and Installation}}<br /> </div><br /> </div><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Reference-svgrepo-com.svg|20px|middle|link=]]</span><span>Reference Manual</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> {{RefMan}}<br /> </div><br /> </div><br /> </div></div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=Test&diff=217 Test 2024-01-18T13:34:51Z

<p>Kulhanek: </p> <hr /> <div><br /> =User commands=<br /> <br /> {| class="wikitable"<br /> ! Command<br /> ! Description<br /> |-<br /> | [[site]]<br /> | manipulates with sites, which are virtual representations of computational resources<br /> |-<br /> | [[module]]<br /> | activate/deactivate software modules<br /> |-<br /> | [[ams-config]]<br /> | user configuration of AMS subsystem<br /> |-<br /> | [[amssetenv]]<br /> | setup available computational resources for parallel execution in interactive command line mode<br /> |}<br /> <br /> == Administration ==<br /> <br /> {| class="wikitable"<br /> ! Command<br /> ! Description<br /> |-<br /> | [[ams-bundle]]<br /> | manipulates with module bundles (collections of software modules) <br /> |-<br /> | [[ams-user]]<br /> | print information about the current user<br /> |-<br /> | [[ams-host]]<br /> | print information about the current host<br /> |}<br /> <br /> == Technical ==<br /> <br /> {| class="wikitable"<br /> ! Command<br /> ! Description<br /> |-<br /> | [[_ams-cgen]]<br /> | provide suggestions for bash-completion of AMS commands <br /> |-<br /> | [[_ams-module-var]]<br /> | manipulate with environment variables<br /> |-<br /> | [[module-add-stat]]<br /> | send statistical data to the ams-isoftstat server<br /> |}</div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=Documentation&diff=216 Documentation 2024-01-18T13:34:44Z

<p>Kulhanek: </p> <hr /> <div><templatestyles src="Template:Main_page/styles.css" /> __NOTOC__ __NOEDITSECTION__<br /> [[Test]]<br /> <br /> <br /> <div id="audiences" class="mainpage_row"><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Book-learn-volume-manual-svgrepo-com1.svg|20px|middle|link=]]</span><span>User Manual</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> {{UserMan}}<br /> </div><br /> </div><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Newspaper-6-svgrepo-com.svg|20px|middle|link=]]</span><span>News</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> * [[2024-01 New major version AMS(9.x)/ABS(4.x)]] - Deployment Schedule<br /> <span class="plainlinks">[[News | <span class="mw-ui-button mw-ui-constructive mw-ui-small">More news</span>]]</span><br /> </div><br /> </div><br /> </div><br /> <br /> <div style="clear: both;"></div><br /> <br /> <div id="audiences" class="mainpage_row"><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Screen-computer-config-configuration-svgrepo-com.svg|20px|middle|link=]]</span><span>Activation, Deactivation, and Installation</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> {{Activation, Deactivation, and Installation}}<br /> </div><br /> </div><br /> <div class="mainpage_box"><br /> <h3><span class="header_icon" aria-hidden="true" role="presentation">[[File:Reference-svgrepo-com.svg|20px|middle|link=]]</span><span>Reference Manual</span></h3><br /> <div id="mainpage-admins" title="ystem administrators" class="items"><br /> {{RefMan}}<br /> </div><br /> </div><br /> </div></div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=RefMan:AMS_Commands&diff=215 RefMan:AMS Commands 2024-01-18T13:32:46Z

<p>Kulhanek: </p> <hr /> <div><br /> =User commands=<br /> <br /> {| class="wikitable"<br /> ! Command<br /> ! Description<br /> |-<br /> | [[site]]<br /> | manipulates with sites, which are virtual representations of computational resources<br /> |-<br /> | [[module]]<br /> | activate/deactivate software modules<br /> |-<br /> | [[ams-config]]<br /> | user configuration of AMS subsystem<br /> |-<br /> | [[amssetenv]]<br /> | setup available computational resources for parallel execution in interactive command line mode<br /> |}<br /> <br /> == Administration ==<br /> <br /> {| class="wikitable"<br /> ! Command<br /> ! Description<br /> |-<br /> | [[ams-bundle]]<br /> | manipulates with module bundles (collections of software modules) <br /> |-<br /> | [[ams-user]]<br /> | print information about the current user<br /> |-<br /> | [[ams-host]]<br /> | print information about the current host<br /> |}<br /> <br /> == Technical ==<br /> <br /> {| class="wikitable"<br /> ! Command<br /> ! Description<br /> |-<br /> | [[_ams-cgen]]<br /> | provide suggestions for bash-completion of AMS commands <br /> |-<br /> | [[_ams-module-var]]<br /> | manipulate with environment variables<br /> |-<br /> | [[module-add-stat]]<br /> | send statistical data to the ams-isoftstat server<br /> |}</div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=RefMan:AMS_Commands&diff=214 RefMan:AMS Commands 2024-01-18T13:29:04Z

<p>Kulhanek: </p> <hr /> <div>[[Documentation]] / [[RefMan|Reference Manual]] / [[RefMan:AMS | Advanced Module System]] / [[RefMan:AMS Commands | Commands]] __NOEDITSECTION__ __NOTOC__<br /> ----<br /> =User commands=<br /> <br /> {| class="wikitable"<br /> ! Command<br /> ! Description<br /> |-<br /> | [[site]]<br /> | manipulates with sites, which are virtual representations of computational resources<br /> |-<br /> | [[module]]<br /> | activate/deactivate software modules<br /> |-<br /> | [[ams-config]]<br /> | user configuration of AMS subsystem<br /> |-<br /> | [[amssetenv]]<br /> | setup available computational resources for parallel execution in interactive command line mode<br /> |}<br /> <br /> == Administration ==<br /> <br /> {| class="wikitable"<br /> ! Command<br /> ! Description<br /> |-<br /> | [[ams-bundle]]<br /> | manipulates with module bundles (collections of software modules) <br /> |-<br /> | [[ams-user]]<br /> | print information about the current user<br /> |-<br /> | [[ams-host]]<br /> | print information about the current host<br /> |}<br /> <br /> == Technical ==<br /> <br /> {| class="wikitable"<br /> ! Command<br /> ! Description<br /> |-<br /> | [[_ams-cgen]]<br /> | provide suggestions for bash-completion of AMS commands <br /> |-<br /> | [[_ams-module-var]]<br /> | manipulate with environment variables<br /> |-<br /> | [[module-add-stat]]<br /> | send statistical data to the ams-isoftstat server<br /> |}</div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=RefMan:AMS_Commands&diff=213 RefMan:AMS Commands 2024-01-18T13:28:49Z

<p>Kulhanek: </p> <hr /> <div>[[Documentation]] / [[RefMan|Reference Manual]] / [[RefMan:AMS | Advanced Module System]] / [[RefMan:AMS Commands | Commands]] __NOEDITSECTION__ __NOTOC__<br /> ----<br /> = User commands =<br /> <br /> {| class="wikitable"<br /> ! Command<br /> ! Description<br /> |-<br /> | [[site]]<br /> | manipulates with sites, which are virtual representations of computational resources<br /> |-<br /> | [[module]]<br /> | activate/deactivate software modules<br /> |-<br /> | [[ams-config]]<br /> | user configuration of AMS subsystem<br /> |-<br /> | [[amssetenv]]<br /> | setup available computational resources for parallel execution in interactive command line mode<br /> |}<br /> <br /> == Administration ==<br /> <br /> {| class="wikitable"<br /> ! Command<br /> ! Description<br /> |-<br /> | [[ams-bundle]]<br /> | manipulates with module bundles (collections of software modules) <br /> |-<br /> | [[ams-user]]<br /> | print information about the current user<br /> |-<br /> | [[ams-host]]<br /> | print information about the current host<br /> |}<br /> <br /> == Technical ==<br /> <br /> {| class="wikitable"<br /> ! Command<br /> ! Description<br /> |-<br /> | [[_ams-cgen]]<br /> | provide suggestions for bash-completion of AMS commands <br /> |-<br /> | [[_ams-module-var]]<br /> | manipulate with environment variables<br /> |-<br /> | [[module-add-stat]]<br /> | send statistical data to the ams-isoftstat server<br /> |}</div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=RefMan:AMS_Commands&diff=212 RefMan:AMS Commands 2024-01-18T13:28:28Z

<p>Kulhanek: </p> <hr /> <div>[[Documentation]] / [[RefMan|Reference Manual]] / [[RefMan:AMS | Advanced Module System]] / [[RefMan:AMS Commands | Commands]] __NOEDITSECTION__ __NOTOC__<br /> ----<br /> == User commands ==<br /> <br /> {| class="wikitable"<br /> ! Command<br /> ! Description<br /> |-<br /> | [[site]]<br /> | manipulates with sites, which are virtual representations of computational resources<br /> |-<br /> | [[module]]<br /> | activate/deactivate software modules<br /> |-<br /> | [[ams-config]]<br /> | user configuration of AMS subsystem<br /> |-<br /> | [[amssetenv]]<br /> | setup available computational resources for parallel execution in interactive command line mode<br /> |}<br /> <br /> == Administration ==<br /> <br /> {| class="wikitable"<br /> ! Command<br /> ! Description<br /> |-<br /> | [[ams-bundle]]<br /> | manipulates with module bundles (collections of software modules) <br /> |-<br /> | [[ams-user]]<br /> | print information about the current user<br /> |-<br /> | [[ams-host]]<br /> | print information about the current host<br /> |}<br /> <br /> == Technical ==<br /> <br /> {| class="wikitable"<br /> ! Command<br /> ! Description<br /> |-<br /> | [[_ams-cgen]]<br /> | provide suggestions for bash-completion of AMS commands <br /> |-<br /> | [[_ams-module-var]]<br /> | manipulate with environment variables<br /> |-<br /> | [[module-add-stat]]<br /> | send statistical data to the ams-isoftstat server<br /> |}</div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=RefMan:AMS_Commands&diff=211 RefMan:AMS Commands 2024-01-18T13:13:58Z

<p>Kulhanek: </p> <hr /> <div>[[Documentation]] / [[RefMan|Reference Manual]] / [[RefMan:AMS | Advanced Module System]] / [[RefMan:AMS Commands | Commands]] __NOEDITSECTION__ __NOTOC__<br /> ----<br /> <br /> <br /> {| class="wikitable"<br /> ! Command<br /> ! Description<br /> |-<br /> | [[site]]<br /> | manipulates with sites, which are virtual representations of computational resources<br /> |-<br /> | [[module]]<br /> | activate/deactivate software modules<br /> |-<br /> | [[ams-config]]<br /> | user configuration of AMS subsystem<br /> |-<br /> | [[amssetenv]]<br /> | setup available computational resources for parallel execution in interactive command line mode<br /> |}<br /> <br /> === Administration ===<br /> <br /> {| class="wikitable"<br /> ! Command<br /> ! Description<br /> |-<br /> | [[ams-bundle]]<br /> | manipulates with module bundles (collections of software modules) <br /> |-<br /> | [[ams-user]]<br /> | print information about the current user<br /> |-<br /> | [[ams-host]]<br /> | print information about the current host<br /> |}<br /> <br /> === Technical ===<br /> <br /> {| class="wikitable"<br /> ! Command<br /> ! Description<br /> |-<br /> | [[_ams-cgen]]<br /> | provide suggestions for bash-completion of AMS commands <br /> |-<br /> | [[_ams-module-var]]<br /> | manipulate with environment variables<br /> |-<br /> | [[module-add-stat]]<br /> | send statistical data to the ams-isoftstat server<br /> |}</div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=RefMan:AMS_Commands&diff=210 RefMan:AMS Commands 2024-01-18T13:12:51Z

<p>Kulhanek: </p> <hr /> <div>[[Documentation]] / [[RefMan|Reference Manual]] / [[RefMan:AMS | Advanced Module System]] / [[RefMan:AMS Commands | Commands]] __NOEDITSECTION__ __NOTOC__<br /> ----<br /> <br /> === User commands ===<br /> {| class="wikitable"<br /> ! Command<br /> ! Description<br /> |-<br /> | [[site]]<br /> | manipulates with sites, which are virtual representations of computational resources<br /> |-<br /> | [[module]]<br /> | activate/deactivate software modules<br /> |-<br /> | [[ams-config]]<br /> | user configuration of AMS subsystem<br /> |-<br /> | [[amssetenv]]<br /> | setup available computational resources for parallel execution in interactive command line mode<br /> |}<br /> <br /> === Administration ===<br /> <br /> {| class="wikitable"<br /> ! Command<br /> ! Description<br /> |-<br /> | [[ams-bundle]]<br /> | manipulates with module bundles (collections of software modules) <br /> |-<br /> | [[ams-user]]<br /> | print information about the current user<br /> |-<br /> | [[ams-host]]<br /> | print information about the current host<br /> |}<br /> <br /> === Technical ===<br /> <br /> {| class="wikitable"<br /> ! Command<br /> ! Description<br /> |-<br /> | [[_ams-cgen]]<br /> | provide suggestions for bash-completion of AMS commands <br /> |-<br /> | [[_ams-module-var]]<br /> | manipulate with environment variables<br /> |-<br /> | [[module-add-stat]]<br /> | send statistical data to the ams-isoftstat server<br /> |}</div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=RefMan:AMS_Commands&diff=209 RefMan:AMS Commands 2024-01-18T13:07:58Z

<p>Kulhanek: </p> <hr /> <div>[[Documentation]] / [[RefMan|Reference Manual]] / [[RefMan:AMS | Advanced Module System]] / [[RefMan:AMS Commands | Commands]] __NOEDITSECTION__ __NOTOC__<br /> ----<br /> <br /> === User commands ===<br /> {| class="wikitable"<br /> ! Command<br /> ! Description<br /> |-<br /> | [[site]]<br /> |<br /> |-<br /> | [[module]]<br /> |<br /> |-<br /> | [[ams-config]]<br /> |<br /> |-<br /> | [[amssetenv]]<br /> |<br /> |}<br /> <br /> === Administration ===<br /> <br /> {| class="wikitable"<br /> ! Command<br /> ! Description<br /> |-<br /> | [[ams-bundle]]<br /> |<br /> |-<br /> | [[ams-user]]<br /> |<br /> |-<br /> | [[ams-host]]<br /> |<br /> |}<br /> <br /> === Technical ===<br /> <br /> {| class="wikitable"<br /> ! Command<br /> ! Description<br /> |-<br /> | [[_ams-cgen]]<br /> |<br /> |-<br /> | [[_ams-module-var]]<br /> |<br /> |-<br /> | [[module-add-stat]]<br /> |<br /> |}</div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=Abs-update-infofile&diff=208 Abs-update-infofile 2024-01-18T13:02:59Z

<p>Kulhanek: </p> <hr /> <div>[[Documentation]] / [[RefMan|Reference Manual]] / [[RefMan:ABS | Advanced Batch System]] / [[RefMan:ABS Commands | Commands]] / [[abs-update-infofile]] __NOEDITSECTION__ __NOTOC__<br /> ----<br /> ./infinity_cmds: line 26: abs-update-infofile: command not found</div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=Abs-restore-env&diff=207 Abs-restore-env 2024-01-18T13:02:58Z

<p>Kulhanek: </p> <hr /> <div>[[Documentation]] / [[RefMan|Reference Manual]] / [[RefMan:ABS | Advanced Batch System]] / [[RefMan:ABS Commands | Commands]] / [[abs-restore-env]] __NOEDITSECTION__ __NOTOC__<br /> ----<br /> ./infinity_cmds: line 26: abs-restore-env: command not found</div>

Kulhanek https://infinity.ncbr.muni.cz/wiki94/index.php?title=Abs-ijobs&diff=206 Abs-ijobs 2024-01-18T13:02:58Z

<p>Kulhanek: </p> <hr /> <div>[[Documentation]] / [[RefMan|Reference Manual]] / [[RefMan:ABS | Advanced Batch System]] / [[RefMan:ABS Commands | Commands]] / [[abs-ijobs]] __NOEDITSECTION__ __NOTOC__<br /> ----<br /> ./infinity_cmds: line 26: abs-ijobs: command not found</div>

Kulhanek