fastqc

tQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis. (Summary from the program web page.)

The official web page:http://www.bioinformatics.babraham.ac.uk/projects/fastqc/

Typical usage

$ module add fastqc
$ fastqc