colabfold

Making protein folding accessible to all. (Summary from the program web page.)

The official web page: https://github.com/sokrypton/ColabFold

Supplementary data: AlphaFold Workshop, 30th May - 2nd June, 2023

• L10 ColabFold
• L11 ColabFold: Finally First Prediction
• L12 ColabFold: Analysing Results

Available tools:

• colabfold_search
• colabfold_batch

Example script (my_job)

#!/usr/bin/env infinity-env

# activate the module
module add colabfold

# run the prediction with default setup (see colabfold_batch -h for the list of options)
# T1049.fasta is an input file with the protein sequence
colabfold_batch T1049.fasta T1049