amber

"Amber" refers to two things: a set of molecular mechanical force fields for the simulation of biomolecules (which are in the public domain, and are used in a variety of simulation programs); and a package of molecular simulation programs which includes source code and demos. (Summary from program web page.)

The official web page: http://ambermd.org

Infinitized applications

• sander
• pmemd
• cpptraj
• gem.pmemd
• mdgx
• MMPBSA.py
• mpi_template
• rism3d.snglpnt
• sander.LES
• simplepbsa
• sqm